breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
MC JC 257,908 Δ776 bp [crl] [crl]
RA 924,050 T→G F263V (TTT→GTT)  clpA → ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity
RA 2,173,363 Δ2 bp intergenic (‑1/+1) gatC ← / ← gatC pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,939,611 G→T D82Y (GAT→TAT)  fucR → l‑fucose operon activator
RA 3,443,906 A→C F64L (TTT→TTG)  secY ← preprotein translocase membrane subunit
RA 3,560,455 +G intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA 4,296,381 +GC intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 83963 84356 394 28 [26] [27] 32 leuL/leuO leu operon leader peptide/global transcription factor
* * ÷ NC_000913 156787 157419 633 30 [23] [27] 28 [yadN]–[folK] [yadN],[folK]
* * ÷ NC_000913 384635 385094 460 28 [24] [27] 28 yaiS/tauA putative PIG‑L family deacetylase/taurine ABC transporter periplasmic binding protein
* * ÷ NC_000913 389786 390131 346 28 [27] [27] 30 hemB/yaiT 5‑aminolevulinate dehydratase (porphobilinogen synthase)/pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein
* * ÷ NC_000913 582695 584641 1947 33 [27] [26] 28 [ybcY]–appY [ybcY],ybcY,tfaX,appY
* * ÷ NC_000913 720789 721170 382 32 [27] [27] 30 [ybfK]–[kdpE] [ybfK],[kdpE]
* * ÷ NC_000913 736121 736861 741 28 [27] [22] 28 [ybfC]–[ybfL] [ybfC],ybfQ,[ybfL]
* * ÷ NC_000913 1196217 1212837 16621 28 [27] [27] 36 [icd]–[ycgX] [icd],ymfD,ymfE,lit,intE,xisE,ymfI,ymfJ,cohE,croE,ymfL,ymfM,oweE,aaaE,ymfR,beeE,jayE,ymfQ,stfP,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,[ycgX]
* * ÷ NC_000913 1216160 1216755 596 30 [24] [27] 28 [ymgA]–[ymgC] [ymgA],ariR,[ymgC]
* * ÷ NC_000913 1299300 1300843 1544 28 [27] [27] 29 ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
* * ÷ NC_000913 1529923 1530592 670 29 [27] [27] 28 [rhsE]–[yncI] [rhsE],[ydcD],[yncI]
* * ÷ NC_000913 1586540 1586809 270 33 [26] [26] 28 ydeP/ydeQ putative oxidoreductase/putative fimbrial‑like adhesin protein
* * ÷ NC_000913 1637018 1637823 806 32 [27] [25] 28 ydfO–gnsB ydfO,gnsB
* * ÷ NC_000913 1978418 1979714 1297 28 [24] [26] 28 insB1–insA insB1,insA
* * ÷ NC_000913 2105936 2106326 391 32 [27] [24] 28 [wbbI]–[wbbH] [wbbI],[wbbH]
* * ÷ NC_000913 2106471 2107384 914 29 [27] [26] 28 [wbbH]–[glf] [wbbH],[glf]
* * ÷ NC_000913 2192141 2192581 441 30 [27] [26] 28 [yehD]–[yehE] [yehD],[yehE]
* * ÷ NC_000913 2344215 2344591 377 34 [21] [27] 28 yfaL/nrdA adhesin/ribonucleoside‑diphosphate reductase 1, alpha subunit
* * ÷ NC_000913 2470071 2470769 699 29 [27] [27] 28 [gtrS] [gtrS]
* * ÷ NC_000913 2785842 2786694 853 29 [27] [27] 28 [ygaQ] [ygaQ]
* * ÷ NC_000913 2798544 2799082 539 29 [26] [26] 30 stpA/alaE DNA binding protein, nucleoid‑associated/alanine exporter, alanine‑inducible, stress‑responsive
* * ÷ NC_000913 2905398 2905774 377 28 [26] [27] 30 [queE]–[ygcG] [queE],yqcG,[ygcG]
* * ÷ NC_000913 2993337 2994405 1069 28 [24] [26] 28 [ygeH]–[pbl] [ygeH],ygeI,pbl,[pbl]
* * ÷ NC_000913 2994976 2996186 1211 28 [26] [27] 30 [ygeK]–[ygeO] [ygeK],ygeN,ygeN,[ygeO]
* * ÷ NC_000913 3267949 3269804 1856 29 [26] [26] 28 [yhaB]–yhaC [yhaB],yhaC
* * ÷ NC_000913 3286918 3287467 550 28 [27] [27] 28 [agaI]–[yraH] [agaI],[yraH]
* * ÷ NC_000913 3582428 3584931 2504 28 [26] [26] 28 [yhhZ]–[yrhB] [yhhZ],yrhA,insA,insB1,yrhA,[yrhB]
* * ÷ NC_000913 3634428 3635016 589 28 [26] [26] 28 [yhiL]–[yhiM] [yhiL],[yhiM]
* * ÷ NC_000913 3769339 3770291 953 29 [27] [26] 28 yibV–[yibH] yibV,yibV,yibU,yibU,[yibH]
* * ÷ NC_000913 3796884 3800415 3532 28 [27] [27] 29 [waaC]–[waaY] [waaC],waaL,waaU,waaZ,[waaY]
* * ÷ NC_000913 3800728 3801468 741 32 [27] [26] 28 [waaY]–[waaR] [waaY],[waaR]
* * ÷ NC_000913 3804153 3805303 1151 29 [26] [27] 28 waaS–[waaP] waaS,[waaP]
* * ÷ NC_000913 4002598 4003396 799 29 [24] [27] 28 [yigF]–[rarD] [yigF],yigG,[rarD]
* * ÷ NC_000913 4078474 4079597 1124 28 [27] [27] 29 yiiE yiiE
* * ÷ NC_000913 4251330 4252040 711 28 [22] [26] 28 yjbI pseudogene, SopA‑related, pentapeptide repeats‑containing
* * ÷ NC_000913 4281950 4283197 1248 30 [24] [25] 28 [yjcF] [yjcF]
* * ÷ NC_000913 4326669 4327167 499 28 [27] [25] 28 [yjdM]–[crfC] [yjdM],[crfC]
* * ÷ NC_000913 4476454 4477203 750 29 [24] [27] 28 yjgL SopA‑central‑domain‑like hexapeptide repeat protein