mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1411899 = | 68 (1.000) | 7 (0.110) | 7/486 | 5.1 | 14.7% | coding (50/936 nt) | ttcA | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| ? | NC_000913 | = 1434958 | 20 (0.330) | pseudogene (51/51 nt) | ttcC | pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 9 (0.130) | 8/530 | 5.1 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 4 (0.070) | 3/460 | 6.8 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 2846747 | 49 (0.740) | 5 (0.070) +CATTT |
3/512 | 7.3 | 9.3% | coding (666/924 nt) | hycD | hydrogenase 3, membrane subunit |
| ? | NC_000913 | 2846748 = | 49 (0.720) | coding (665/924 nt) | hycD | hydrogenase 3, membrane subunit | |||||
| * | ? | NC_000913 | = 4433885 | 94 (1.380) | 3 (0.040) | 3/536 | 7.5 | 3.1% | coding (140/861 nt) | qorB | NAD(P)H:quinone oxidoreductase |
| ? | NC_000913 | 4433891 = | 92 (1.360) | coding (134/861 nt) | qorB | NAD(P)H:quinone oxidoreductase | |||||
| * | ? | NC_000913 | = 3589138 | 40 (0.590) | 3 (0.040) | 3/534 | 7.5 | 6.9% | coding (43/1071 nt) | ugpC | sn‑glycerol‑3‑phosphate ABC transporter ATPase |
| ? | NC_000913 | 3589143 = | 41 (0.610) | coding (38/1071 nt) | ugpC | sn‑glycerol‑3‑phosphate ABC transporter ATPase | |||||