mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 27.7% | 86.0 / 28.4 | 51 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 52 (0.680) | 12 (0.170) | 11/512 | 4.5 | 18.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 59 (0.820) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 52 (0.680) | 10 (0.140) | 10/512 | 4.8 | 15.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 60 (0.830) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1411899 = | 92 (1.200) | 5 (0.070) | 5/492 | 6.6 | 7.0% | coding (50/936 nt) | ttcA | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| ? | NC_000913 | = 1434958 | 50 (0.720) | pseudogene (51/51 nt) | ttcC | pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4308686 | 82 (1.100) | 7 (0.090) +GGCATA |
3/516 | 7.9 | 7.9% | coding (784/981 nt) | alsC | D‑allose ABC transporter permease |
| ? | NC_000913 | 4308687 = | 82 (1.070) | coding (783/981 nt) | alsC | D‑allose ABC transporter permease | |||||
| * | ? | NC_000913 | = 4217479 | 74 (0.990) | 10 (0.130) +CAA |
3/522 | 8.0 | 11.4% | coding (371/1305 nt) | aceA | isocitrate lyase |
| ? | NC_000913 | 4217480 = | 81 (1.060) | coding (372/1305 nt) | aceA | isocitrate lyase | |||||
| * | ? | NC_000913 | = 4373275 | NA (NA) | 3 (0.040) | 3/532 | 8.1 | 3.9% | noncoding (79/99 nt) | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4374582 = | 74 (0.990) | noncoding (85/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 4470434 | NA (NA) | 3 (0.040) | 3/542 | 8.2 | 2.9% | noncoding (54/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4470439 = | 101 (1.320) | noncoding (59/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 3251533 | 97 (1.260) | 3 (0.040) | 3/538 | 8.2 | 3.0% | coding (510/987 nt) | yqjG | putative S‑transferase |
| ? | NC_000913 | 3251537 = | 95 (1.250) | coding (514/987 nt) | yqjG | putative S‑transferase | |||||