| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | BX571857 | 2,220,583 | 30 bp→TTTTTTTTTTAATGATACGGCGACCACCGA | 12.0% | pseudogene (4082‑4111/5385 nt) | fmtB ← | putative surface anchored protein (pseudogene) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | = 2220582 | 172 (1.090) | 15 (0.150) +TTTTTTTTTTAATGATACGGCGACCACCGA |
8/112 | NT | 12.0% | pseudogene (4112/5385 nt) | fmtB | putative surface anchored protein (pseudogene) |
| ? | BX571857 | 2220613 = | 168 (1.060) | pseudogene (4081/5385 nt) | fmtB | putative surface anchored protein (pseudogene) | |||||
CAGCTTGATCAACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/2220523‑2220582‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGTCTGTAACTGCTGTTGCTAATTGTTGAATAGCTGCTT > BX571857/2220613‑2220696 |||||||||||||||||||||||||||||| CAGCTTGATCAACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTGTTTTTTTTTATTGATACGGCGTCCACCGAGATCTAC < 2:2047052/97‑1 GCTTGATCAACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTGATTTTTTTTCTTGCCACGGCCTCCCCCGAGATCTACAC < 2:1414568/97‑1 CTTTATCAACATCTTTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACC < 2:1182194/97‑1 CTTGTTCAACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACC < 2:2038018/97‑1 CTTGATCAACATCGTTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTCTTGCTACGGCGACCACCGAGATCTACACC < 2:2161236/97‑1 CTTCATCAACATCATTTTTAGCATTTGATTTAACCCATGGTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACC < 2:1017258/97‑1 TCAACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACCGCGACCCCCGAGATCTACACCATTAT < 2:2607499/97‑1 TTGGTTTAACCGATCTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAAT < 2:642976/97‑1 TTGATTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGCTACGGCGACCCCCGTGATCTACACCATTATCATCAGTTGCAGCTGTAAT < 2:1068906/97‑1 TTGATTTAACCGATGTGGCTGGTTGCGTGCTTTGTTTTTTTTTAATGATACGGCGTCCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAAT < 2:273096/97‑1 TTTCACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTA < 2:1983622/97‑1 TTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTCTTGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTA < 2:2170459/97‑1 TTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTCATGCTACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTA < 2:1704390/97‑1 TGCTGGTTGCGTGCTTTGATTTTTTTTCATGCTACGGCGTTCCGCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGTCT < 2:444062/97‑1 CGTTCTTTTTTTTTTTTTAATGATACGGCGACCCCCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGTCTGTAACTGCT < 2:2223976/97‑1 CGGCGTCCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGTCTGTAACTGCTGTTGCTAATTGTTGAATAGCTGCTT < 2:219037/97‑1 |||||||||||||||||||||||||||||| CAGCTTGATCAACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/2220523‑2220582‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGTCTGTAACTGCTGTTGCTAATTGTTGAATAGCTGCTT > BX571857/2220613‑2220696 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |