| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | BX571857 | 2,220,583 | 30 bp→TTTTTTTTTTAATGATACGGCGACCACCGA | 18.7% | pseudogene (4082‑4111/5385 nt) | fmtB ← | putative surface anchored protein (pseudogene) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | = 2220582 | 174 (1.140) | 25 (0.250) +TTTTTTTTTTAATGATACGGCGACCACCGA |
18/112 | NT | 18.7% | pseudogene (4112/5385 nt) | fmtB | putative surface anchored protein (pseudogene) |
| ? | BX571857 | 2220613 = | 163 (1.060) | pseudogene (4081/5385 nt) | fmtB | putative surface anchored protein (pseudogene) | |||||
GCTTGATCAACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/2220525‑2220582‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGTCTGTAACTGCTGTTGCTA > BX571857/2220613‑2220678 |||||||||||||||||||||||||||||| GCTTGATCATCATCTTTTTTTGCATTTGATTTAGCCGGTGCTCCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACAC < 2:1914931/97‑1 CTTGTTCATCTTCATTTTTAGCTTTTGATTTAACCTATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTATTGCTACGGCGTCCACCGTGATCTACACC < 2:716976/97‑1 TCAACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTCTTGCCACCGCCTCCCCCGAGATCTACACCATTAT < 2:1176553/97‑1 ACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCAT < 2:696489/97‑1 ctTCATTTTTAGTTTTTGATTTCACCCATGTTGCTTGTTTCGTTCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATC < 2:402701/95‑1 CATCATTTTTTGCTTTTGATTTAACCCATGTTGCTGGTTTCCTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATC < 2:275400/97‑1 CATCATTTTTTGCATTTGGTTTAACCGGTGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATC < 2:1891007/97‑1 TCATTTTTTGCTTTTGATTTACCCCATGCTGCTGGTTGCTTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAG < 2:1275083/97‑1 CATTTTTAGCTTTTGATTTCACCCATGTTGCGGGGTGCGTGCTTTTTTTTTTTTTAATGATACGGCGGCCCCCGTGATCTACACCATTATCATCAGT < 2:2286804/97‑1 TTTAGCATTTGATTTCACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCA < 2:63109/97‑1 TTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTTATTTGTTTTCTTGCCACCGCCACCCCCGAGATCTACACCATTATCATCAGTTGCAG < 2:533475/97‑1 ttGCATTTGATTTAACCGATGTTGCTGGTTGCTTGCTTTTTTTTTTTTTAATGATACGGCGTCCACCGAGATCTACACCATTATCATCAGTTGCAGC < 2:1495854/95‑1 GCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTCATGCCACCGCCACCCCCGTGATCTACACCATTATCATCAGTTGCAGCTG < 2:668782/97‑1 CATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTATTGCCACGGCGACCCCCGAGATCTACACCATTATCATCAGTTGCAGCTGT < 2:638702/97‑1 ATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTA < 2:1415967/97‑1 tcTGATTTAGCCGATGTTGCTGGTTGTCTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAA < 2:1804262/95‑1 TTTGATTTAGCCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAA < 2:1881526/97‑1 TTTGATTTAACCGATGTTGCTTGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAA < 2:2219518/97‑1 GATTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTCTTGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATAT < 2:1309529/97‑1 GATTTAACCGATGTTGCTGGTTGCGTGCTTTGTTTTTTTTTAATTCTACGGCCTCCCCCCAGATCTACACCATTATCATCAGTTGCAGCTGTAATAT < 2:2544996/97‑1 tgTTACCCGTTCTTGCTTGTTTCGTTCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATT < 2:290454/95‑1 TTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGTCCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTA < 2:1033527/97‑1 TTAACCGATGTTTCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTAT < 2:418603/97‑1 TTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTATTGATAGGGCCTTCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTAT < 2:418374/97‑1 TTAACCGATGTTGCTGGTTGCGTGCTTTTATTTTTTTTCTTGCTAGCGCGACTCCCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTAT < 2:2232028/97‑1 tgTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGTCTGTAACTGCTGTTGCTA < 2:409427/95‑1 |||||||||||||||||||||||||||||| GCTTGATCAACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/2220525‑2220582‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGTCTGTAACTGCTGTTGCTA > BX571857/2220613‑2220678 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |