New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BX571857	= 2057286	301 (1.360)	6 (0.030)	6/152	NT	2.3%	intergenic (‑168/+45)	SAS1905/SAS1906	hypothetical phage protein/hypothetical phage protein
	?	BX571857	2057751 =	245 (1.270)					coding (501/921 nt)	SAS1906	hypothetical phage protein
Rejected: Frequency below/above cutoff threshold.

TGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  BX571857/2057180‑2057286 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtccatcattAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTTCTCCC  >  BX571857/2057751‑2057847                                                                                                                                                                                                              TGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACG                                                                                                            <  1:1588189/98‑1  GTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTACCGTAGTACGT                                                                                                           >  2:2690587/1‑98  GTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGT                                                                                                           >  2:1243635/1‑98  GTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGT                                                                                                           >  2:2546659/1‑98  GTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGT                                                                                                           >  1:2481589/1‑98  GTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGT                                                                                                           >  2:2912130/1‑98  GTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGT                                                                                                           <  2:3260260/98‑1  GTGTGATAAGACACCCGGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGT                                                                                                           <  1:1695708/98‑1   TGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTC                                                                                                          >  1:1074355/1‑98    gttATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCC                                                                                                         <  1:1225527/95‑1    GTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCC                                                                                                         >  1:3326277/1‑98    GTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCC                                                                                                         <  2:3330119/98‑1    GTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCC                                                                                                         >  1:2068506/1‑98    GTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCC                                                                                                         >  1:2068519/1‑98    GTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCC                                                                                                         >  1:2068602/1‑98    GTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCC                                                                                                         <  1:1084099/98‑1    GTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCC                                                                                                         <  1:2800272/98‑1    GTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCC                                                                                                         <  1:3646633/98‑1    GTGATAAGACACCCTGCTATATGTCTTGTTGTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCC                                                                                                         <  2:3480770/98‑1     tggTAAGACTCCCTGCTATATGTCTTGTTTTATAGTTGAGATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCA                                                                                                        <  2:2008644/95‑1     TGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCA                                                                                                        >  2:105624/1‑98      GATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCAT                                                                                                       >  2:2013396/1‑98      GATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCAT                                                                                                       >  2:2019619/1‑98      GATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCAT                                                                                                       >  2:2019611/1‑98      GATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCAT                                                                                                       >  2:2013457/1‑98       ATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATC                                                                                                      <  2:270353/98‑1       ATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATC                                                                                                      <  1:3471500/98‑1       ATAAGACACCCTGCTATATGTCTTGTGTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATC                                                                                                      <  2:270322/98‑1        TAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCA                                                                                                     <  2:2434794/98‑1        TAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCA                                                                                                     <  2:518786/98‑1        TAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCA                                                                                                     >  2:2928144/1‑98         AAGACATCCTGCTATATGTCTTGTTTTTTATTTGAAATGCTTGTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTGACGTAGTACGTCCATCAT                                                                                                    <  2:406875/98‑1         AAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCAT                                                                                                    >  1:3635646/1‑98         AAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCAT                                                                                                    <  2:2861647/98‑1         AAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCAT                                                                                                    >  1:976739/1‑98         AAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCAT                                                                                                    >  2:1047664/1‑98         AAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCAT                                                                                                    <  2:192524/98‑1         AAGACACCCTGCTATAGGTCTTGTTTTATAGTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGACTCAAGTAGGAACGTGGGACGTCCATCga                                                                                                    <  2:1427700/98‑3          AGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATT                                                                                                   >  1:3531/1‑98            ACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTAA                                                                                                 >  2:953372/1‑98               CCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTAAATA                                                                                              >  1:1510643/1‑98                                   TATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTAAATACGATTGTGCAGTACGCACCG                                                                          <  1:1259105/98‑1                                                       ACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGAT                                                      >  2:2201883/1‑98                                                               AAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGA                                              <  1:1067769/98‑1                                                                   TTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTC                                          >  1:2319132/1‑98                                                                            GCCTCAAGTAGTAACGTAGTACGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTG                                 <  1:209842/98‑1                                                                                CAAGTAGTAACGTAGTACGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTA                             <  2:1526424/98‑1                                                                                            TAGTACGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATA                 <  2:1500222/98‑1                                                                                                 CGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCC            >  2:1795222/1‑98                                                                                                 CGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCC            >  2:1018324/1‑98                                                                                                 CGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCC            >  2:2760557/1‑98                                                                                                  GTCCTTCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCT           <  2:2892267/98‑1                                                                                                   TCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGCTACGTCCTG          >  2:374931/1‑98                                                                                                   TCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTG          >  2:862212/1‑98                                                                                                   TCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTG          >  2:3161830/1‑98                                                                                                    CCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGT         >  2:1495077/1‑98                                                                                                    CCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGT         >  2:1530443/1‑98                                                                                                    CCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGT         >  2:300231/1‑98                                                                                                    CCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGT         <  1:2296185/98‑1                                                                                                    CCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGT         <  2:2579456/98‑1                                                                                                     CATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTT        >  1:1520616/1‑98                                                                                                      ATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTT       <  1:3444546/98‑1                                                                                                      ATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTT       <  1:2480064/98‑1                                                                                                       TCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTTC      >  1:386396/1‑98                                                                                                       TCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTTC      >  2:3260931/1‑98                                                                                                        CATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTTCT     >  1:2889518/1‑98                                                                                                        CATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTTCT     <  1:1391902/98‑1                                                                                                         ATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTTCTC    <  1:2318479/98‑1                                                                                                         ATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTTCTC    <  2:521674/98‑1                                                                                                          TTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTTCTCC   >  1:1909611/1‑98                                                                                                          TTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTTCTCC   <  1:1693594/98‑1                                                                                                          TTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTTCTCC   >  1:3243788/1‑98                                                                                                           TAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTTCTCCC  <  2:2530461/98‑1                                                                                                           TAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTTCTCCC  <  1:349566/98‑1                                                                                                                                                                                                              TGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  BX571857/2057180‑2057286 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtccatcattAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTTCTCCC  >  BX571857/2057751‑2057847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.