New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? BX571857 = 2057286301 (1.360)6 (0.030) 6/152 NT 2.3% intergenic (‑168/+45) SAS1905/SAS1906 hypothetical phage protein/hypothetical phage protein
?BX571857 2057751 = 245 (1.270)coding (501/921 nt) SAS1906 hypothetical phage protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 319 total aligned reads displayed.

GTAATGCTTTTTCATCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTTCTCCCA  >  BX571857/2057654‑2057848
                                                                                                 |                                                                                                 
gTAATGCTTTTTCATCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCATTAGTCATTACTTCAATATAGTTTTCTCGTCCATAATTa                                                                                                   >  2:3106382/1‑98 (MQ=255)
 tAATGCTGTTTCATCTTTAAGCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGGCCATCATTaa                                                                                                  <  2:1936127/98‑1 (MQ=255)
    tGCTTTTTCATCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCATTATAGTTATCTCGTCCATCATTAAATa                                                                                               >  2:2382793/1‑98 (MQ=255)
    tGCTTTTTCATCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATa                                                                                               >  1:105324/1‑98 (MQ=255)
    tGCTTTTTCATCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATa                                                                                               >  2:1786459/1‑98 (MQ=255)
    ccctgctatatgtcttgttttatatttgaaatgcttttgaacacgttcaaattttatacctgcctcaagtagtaacgtagtacgtccatcattAAATa                                                                                               >  1:1510643‑M2/94‑98 (MQ=255)
     gCTTTTTCTTCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATAc                                                                                              >  2:1114721/1‑98 (MQ=255)
     gCTTTTTCATCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATAc                                                                                              >  1:3275979/1‑98 (MQ=255)
      cTTTTTCTTCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACg                                                                                             <  1:944370/98‑1 (MQ=255)
      cTTTTTCATCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACg                                                                                             >  1:496337/1‑98 (MQ=255)
       tttttCATCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGa                                                                                            >  1:2699547/1‑98 (MQ=255)
         tttCATCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGAtt                                                                                          <  1:2444080/98‑1 (MQ=255)
          ttCATCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATtg                                                                                         >  1:1804910/1‑98 (MQ=255)
           tCATCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATtgt                                                                                        >  2:2048866/1‑98 (MQ=255)
            cATCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAACTACGATtgtg                                                                                       >  2:2217672/1‑98 (MQ=255)
             aTCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGc                                                                                      >  2:651632/1‑98 (MQ=255)
             aTCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGc                                                                                      <  1:988737/98‑1 (MQ=255)
              tCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCa                                                                                     <  1:1410895/98‑1 (MQ=255)
              tCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCa                                                                                     >  2:2517138/1‑98 (MQ=255)
               cTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAg                                                                                    >  2:3641413/1‑98 (MQ=255)
               cTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAg                                                                                    >  1:1361849/1‑98 (MQ=255)
                tttAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGt                                                                                   <  2:2834674/98‑1 (MQ=255)
                tttAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGt                                                                                   <  2:3406266/98‑1 (MQ=255)
                tttAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGt                                                                                   <  2:3309603/98‑1 (MQ=255)
                  tAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTAc                                                                                 >  1:2665321/1‑98 (MQ=255)
                    aTCGTTGCTTACTGCAGCCATTCTTGTTTATTTGGTTCAAGAGCCGTGACTTCTAGATAGTTGTCTCGTCCATCATTAAATACGATTGTGCAGGACGc                                                                               <  2:1660926/98‑1 (MQ=255)
                    aTCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGc                                                                               >  1:1985599/1‑98 (MQ=255)
                      cATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCAc                                                                             >  2:2667785/1‑98 (MQ=255)
                      cATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCAc                                                                             <  1:74407/98‑1 (MQ=255)
                      cATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCAc                                                                             >  2:1354603/1‑98 (MQ=255)
                             gaCTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAAt                                                                      >  1:576229/1‑98 (MQ=255)
                              aCTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATg                                                                     >  1:64897/1‑98 (MQ=255)
                              aCTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATg                                                                     >  1:2105475/1‑98 (MQ=255)
                               cTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGt                                                                    <  1:2131503/98‑1 (MQ=255)
                               cTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGt                                                                    >  1:1743272/1‑98 (MQ=255)
                                 gCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGttt                                                                  >  2:3367418/1‑98 (MQ=255)
                                  cATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGtttt                                                                 <  1:3057015/98‑1 (MQ=255)
                                   aTCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTc                                                                <  2:116633/98‑1 (MQ=255)
                                    tCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCt                                                               >  2:3149325/1‑98 (MQ=255)
                                    tCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCt                                                               <  1:2634145/98‑1 (MQ=255)
                                    tCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCt                                                               <  1:2957097/98‑1 (MQ=255)
                                    tCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCt                                                               >  1:152456/1‑98 (MQ=255)
                                     ccATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCtt                                                              <  1:2373094/98‑1 (MQ=255)
                                     ccATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCtt                                                              <  1:66431/98‑1 (MQ=255)
                                      cATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCttt                                                             <  1:702072/98‑1 (MQ=255)
                                       aTGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTg                                                            >  2:1891499/1‑98 (MQ=255)
                                         gCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTc                                                          >  2:3528716/1‑98 (MQ=255)
                                         gCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTc                                                          >  1:1843480/1‑98 (MQ=255)
                                             gTTTAATGGGTTCACTAGTCATGACTTCAATATGGTTAGCTCGTCCATCATTAAAGACGGTGGTGCAGTACGCACCGATAATGTTTTCTTTGTCGagg                                                      <  2:3173864/98‑3 (MQ=255)
                                              tttAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGt                                                     >  2:1432212/1‑98 (MQ=255)
                                               ttAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGtt                                                    >  1:3308573/1‑98 (MQ=255)
                                                 aaTTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTaa                                                  <  2:2538495/98‑1 (MQ=255)
                                                    ttGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAaaga                                               >  1:3615031/1‑98 (MQ=255)
                                                     tGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAaagaa                                              <  2:1483976/98‑1 (MQ=255)
                                                      gTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAaagaag                                             >  1:3602096/1‑98 (MQ=255)
                                                        tCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTc                                           <  2:2008176/98‑1 (MQ=255)
                                                        tCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAACGTTTTCTTTGTCGATGTTAAAGAAGTc                                           >  2:1550172/1‑98 (MQ=255)
                                                           aTAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTg                                        >  1:3208274/1‑98 (MQ=255)
                                                            tAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGt                                       <  1:1024642/98‑1 (MQ=255)
                                                            tAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGt                                       >  1:1082680/1‑98 (MQ=255)
                                                            tAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGt                                       >  1:1229643/1‑98 (MQ=255)
                                                            tAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGt                                       >  2:1222272/1‑98 (MQ=255)
                                                             aGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGtt                                      >  1:2986652/1‑98 (MQ=255)
                                                             aGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGtt                                      >  2:2887078/1‑98 (MQ=255)
                                                             aGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGtt                                      >  1:2187073/1‑98 (MQ=255)
                                                             aGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGtt                                      >  1:3173249/1‑98 (MQ=255)
                                                             aGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGtt                                      >  1:3458749/1‑98 (MQ=255)
                                                              gTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTc                                     <  2:1312982/98‑1 (MQ=255)
                                                               tCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCg                                    >  1:3437908/1‑98 (MQ=255)
                                                               tCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGAGGTTAAAGAAGTCTTGTCCg                                    >  2:2984672/1‑98 (MQ=255)
                                                                   gACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCt                                >  1:1895957/1‑98 (MQ=255)
                                                                   gACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCt                                >  2:773948/1‑98 (MQ=255)
                                                                   gACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCt                                >  1:1290055/1‑98 (MQ=255)
                                                                    aCTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCtt                               <  1:1659588/98‑1 (MQ=255)
                                                                     caagtagtaacgtagtacgtccatcattAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTa                              <  2:1526424‑M2/70‑1 (MQ=255)
                                                                     cTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTa                              >  1:373885/1‑98 (MQ=255)
                                                                      ttCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTaa                             <  2:3047714/98‑1 (MQ=255)
                                                                      ttCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTaa                             <  1:768425/98‑1 (MQ=255)
                                                                         aaTATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCg                          <  2:2098315/98‑1 (MQ=255)
                                                                          atatAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGc                         <  1:3141772/98‑1 (MQ=255)
                                                                           tataGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCt                        <  2:927905/98‑1 (MQ=255)
                                                                           tataGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCt                        <  2:3467743/98‑1 (MQ=255)
                                                                           tataGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCt                        <  2:2173626/98‑1 (MQ=255)
                                                                            ataGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCtt                       <  2:2306465/98‑1 (MQ=255)
                                                                            ataGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCtt                       <  1:2770322/98‑1 (MQ=255)
                                                                            ataGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCtt                       <  1:815649/98‑1 (MQ=255)
                                                                              aGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTg                     >  2:2588516/1‑98 (MQ=255)
                                                                               gTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGa                    <  1:3521996/98‑1 (MQ=255)
                                                                                ttATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGAt                   <  2:3557157/98‑1 (MQ=255)
                                                                                ttATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGAt                   <  1:1544724/98‑1 (MQ=255)
                                                                                 tATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTTGATGTTAAAGAAGTCTTGTTCGTGCTTACTCGCTTTGATa                  >  2:1707933/1‑98 (MQ=255)
                                                                                    ctcGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGt               <  1:223848/98‑1 (MQ=255)
                                                                                      cgtccatcattAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTcc             >  2:2760557‑M2/12‑98 (MQ=255)
                                                                                        tccatcattAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTg           >  2:862212‑M2/10‑98 (MQ=255)
                                                                                         ccatcattAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGt          <  1:2296185‑M2/90‑1 (MQ=255)
                                                                                           atcattAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGttt        <  1:2480064‑M2/92‑1 (MQ=255)
                                                                                             cattAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTtct      >  1:2889518‑M2/5‑98 (MQ=255)
                                                                                              attAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTtctc     <  2:521674‑M2/95‑1 (MQ=255)
                                                                                                tAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTTCTccc   <  1:349566‑M2/97‑1 (MQ=255)
                                                                                                 aaaTACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTTCTCCCa  >  1:90788/1‑98 (MQ=255)
                                                                                                 |                                                                                                 
GTAATGCTTTTTCATCTTTAATCATTGATGACTGCATCCATGCTTGTTTAATTTGTTCAATAGTCATGACTTCAATATAGTTATCTCGTCCATCATTAAATACGATTGTGCAGTACGCACCGATAATGTTTTCTTTGTCGATGTTAAAGAAGTCTTGTTCGTGCTTAATCGCTTTGATACGTCCTGTTTCTCCCA  >  BX571857/2057654‑2057848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.