New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 359689	48 (1.100)	14 (0.330)	12/256	2.8	23.5%	intergenic (+46/+74)	gbdR/PP_0299	AraC family transcriptional regulator/hypothetical protein
	?	NC_002947	= 359707	45 (1.080)					intergenic (+64/+56)	gbdR/PP_0299	AraC family transcriptional regulator/hypothetical protein

GATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTCA‑CC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/359541‑359689 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tca‑ccGCTG‑GCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGCCGCCATCGGCCCGCTGTGCGG  <  NC_002947/359707‑359572                                                                                                                                                                                                                                                                                                  GATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCA‑CC                                                                                                                                           >  2:895562/1‑150       GATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTCA‑CCGCTG‑GCT                                                                                                                                   >  2:407752/1‑150                     TGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTCACCCGCTG‑GCTCAAGCTCAGCGGG                                                                                                                      <  1:77439/150‑1                       ACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTCA‑CCGCTG‑GCTCAAGCTCAGCGGGTGA                                                                                                                   <  2:316282/150‑1                        CCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCAAGCCCGCCCCCACAGATCA‑CCGCTG‑GCTCAAGCTCAGCGGGTGAC                                                                                                                  <  2:281830/150‑1                            GTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTCA‑CCGCTG‑GCTCAAGCTCAGCGGGTGACCTGT                                                                                                              <  2:168152/150‑1                             TCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCAAGCCCGCCCCCACAGATCA‑CCGCTG‑GCTCAAGCTCAGCGGGTGACCTGTG                                                                                                             <  2:260373/150‑1                              CGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCA‑CCGCTG‑GCTCAAGCTCAGCGGGTGACCTGTG                                                                                                             <  1:895562/150‑1                                 CGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCA‑CCGCTG‑GCTCAAGCTCAGCGGGTGACCTGTGGGA                                                                                                          <  1:196216/150‑1                                                              CAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTCACCCGCTG‑GCTCAAGCTCAGCGG                                                                                                                       <  1:345829/108‑1                                                              CAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTCACCCGCTG‑GCTCAAGCTCAGCGG                                                                                                                       >  2:345829/1‑108                                                                                                                                     CCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGC‑GGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGCCGCCATCGGCCCGCTGT      >  1:407752/1‑150                                                                                                                                         TCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGC‑GGTGATCTGTGGGGGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGCCGCCATCGGCCCGCTGTGCGG  >  2:487467/1‑150                                                                                                                                           CCACAGGTCACCCGCTGAGCTTGAGC‑CAGC‑GGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGC                       >  1:8724/1‑127                                                                                                                                           CCACAGGTCACCCGCTGAGCTTGAGC‑CAGC‑GGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGC                       <  2:8724/127‑1                                                                                                                                                                                                                                                                                                  GATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTCA‑CC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/359541‑359689 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tca‑ccGCTG‑GCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGCCGCCATCGGCCCGCTGTGCGG  <  NC_002947/359707‑359572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.