New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 90374	29 (0.980)	6 (0.230)	6/214	NT	16.4%	intergenic (+49/+73)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein
	?	NC_002947	= 90397	36 (1.400)					intergenic (+72/+50)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein

TGGAGGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/90210‑90374 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggccgctcccacaTGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAACGCCCCACGCCGCTTGCGCGGCG  <  NC_002947/90397‑90255                                                                                                                                                                                                                                                                                                                      tgcAGGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACAC                                                                                                                                                                >  1:795428/4‑150     GGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGG                                                                                                                                                            >  2:82853/1‑150      GGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGAGACACAAGGC                                                                                                                                                           <  2:570031/150‑1           TTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTC                                                                                                                                                      <  2:498240/150‑1                GCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCGAGCAGCGTGTGGCTTTGATCGAGCGGTTTGTGGATCCTTGGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACA                                                                                                                                                 <  1:376826/150‑1                              TATTACGTAGTCTTACCTCCGCGCAAGCGGCGTGGGGCGTTGATGGAGGTGTTTGTGGATTGGTTGGAGCAGGAGCGCAGTCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACATGGGCCGGCGTGTG                                                                                                                                   <  2:336431/150‑1                                              CGCCGCGCAAGCGGGGGGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGA                                                                                                                   <  2:348084/150‑1                                                                        ATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCG                                                                                                                                          <  2:397817/101‑1                                                                        ATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCG                                                                                                                                          >  1:397817/1‑101                                                                                     TGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCC                                                                                                                                                     >  1:430583/1‑77                                                                                     TGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCC                                                                                                                                                     <  2:430583/77‑1                                                                                        ATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGT                                                                                                         <  2:129455/118‑1                                                                                        ATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGT                                                                                                         >  1:129455/1‑118                                                                                                    AGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAG                                                                                                                                                             <  1:621192/54‑1                                                                                                    AGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAG                                                                                                                                                             >  2:621192/1‑54                                                                                                                                                       AAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAACGCCCCACGCCGCct          >  2:437927/1‑148                                                                                                                                                       AAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTC                                                                                                      <  2:145502/58‑1                                                                                                                                                       AAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTC                                                                                                      >  1:145502/1‑58                                                                                                                                                          GCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGT                                                                                                                       <  2:143923/38‑1                                                                                                                                                          GCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGT                                                                                                                       >  1:143923/1‑38                                                                                                                                                            CGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAACGCCCCACGCCGCTTGCGCG     <  2:495353/150‑1                                                                                                                                                               TCCCACCTGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAACGCCCCACGCCGCTTGCGCGGCG  >  2:647880/1‑150                                                                                                                                                                                                                                                                                                                      TGGAGGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/90210‑90374 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggccgctcccacaTGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAACGCCCCACGCCGCTTGCGCGGCG  <  NC_002947/90397‑90255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.