New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 90374	29 (0.980)	6 (0.230)	6/214	NT	16.4%	intergenic (+49/+73)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein
	?	NC_002947	= 90397	36 (1.400)					intergenic (+72/+50)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein

CGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAG  >  NC_002947/90255‑90544                                                                                                                                               |                                                                                                                                                    cgccgcGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCAggtggga                                                                                                                                              >  2:647880‑M2/1‑143 (MQ=255)    cgcgCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCAtgtgggagcg                                                                                                                                           <  2:495353‑M2/150‑11 (MQ=255)         aggcggcgtgGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCAtgtgggagcggcctt                                                                                                                                      >  2:437927‑M2/3‑135 (MQ=255)                 tGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTcgcg                                                                                                                              >  1:101249/1‑150 (MQ=255)                     gCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGGCCACATCATGTGATATTTTGGGGCCGCTTTGCGATGTGGCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATgg                                                                                                                          <  1:178181/150‑1 (MQ=255)                             cGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgca                                                                                                                  <  2:388338/150‑1 (MQ=255)                             cGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgca                                                                                                                  <  1:514164/150‑1 (MQ=255)                                   gTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATGTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGcc                                                                                                            <  2:68051/150‑1 (MQ=255)                                                 tggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGAc                                                                                              <  1:528121/150‑1 (MQ=255)                                                       aGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTa                                                                                                 >  2:473476/1‑141 (MQ=255)                                                       aGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTa                                                                                                 <  1:473476/141‑1 (MQ=255)                                                       aGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGaa                                                                                        <  1:82853/150‑1 (MQ=255)                                                           gcgcAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTc                                                                                    <  1:61881/150‑1 (MQ=255)                                                           gcgcAGCCGTGGAGACTTTCGGGCCGCTTTGCGGCCCATCGCCACCCAAGGCCGCCCCCACAGTGCCACTGCACACGCCGGCCCATGCGAGAGCCTCCTCGCGTCGCGATGCGCTGCGCAGCAGCCCCGGCACTCTAGCCCACGAAGCTc                                                                                    >  2:240954/1‑150 (MQ=255)                                                             gcAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAg                                                                                  <  2:436647/150‑1 (MQ=255)                                                              cAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAgg                                                                                 >  2:708306/1‑150 (MQ=255)                                                              cAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAgg                                                                                 <  1:708306/150‑1 (MQ=255)                                                                 ccTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGCCACAAGGCCGCTCCCACAATGGCACTGCACACGCCGGCCCATGTGGGACCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTAAGGTgc                                                                              >  2:507936/1‑150 (MQ=255)                                                                              ggggCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCa                                                                 >  1:217601/1‑150 (MQ=255)                                                                               gggCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCaa                                                                <  2:795428/150‑1 (MQ=255)                                                                                 gCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgcagca                                                                                                               <  1:574691/101‑1 (MQ=255)                                                                                 gCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgca                                                                                                                  >  1:582631/1‑98 (MQ=255)                                                                                 gCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgca                                                                                                                  <  2:582631/98‑1 (MQ=255)                                                                                 gCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGAGGGAGCGGCCTTGCGTCGCGATGGGCTGCgcagca                                                                                                               >  2:574691/1‑101 (MQ=255)                                                                                          cGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtccagctcca                                                     >  1:92997/1‑150 (MQ=255)                                                                                                aTCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGccc                                                                                                           <  1:393884/90‑1 (MQ=255)                                                                                                aTCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGccc                                                                                                           >  2:393884/1‑90 (MQ=255)                                                                                                aTCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGt                                               >  1:715216/1‑150 (MQ=255)                                                                                                    cgACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATAGAATGCACAGCAGCCCCGGCGATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTccac                                           <  1:495353/150‑1 (MQ=255)                                                                                                     gACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCAtgtgggagcggcctt                                                                                                                                      <  2:145502‑M2/58‑16 (MQ=255)                                                                                                     gACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCAtgtgggagcggcctt                                                                                                                                      >  1:145502‑M2/1‑43 (MQ=255)                                                                                                        acaAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCAtgtgggagcggccttgtgtcgcgatgggccgcaaagcggccccaaaatctcaaaggctgcgctcctgctccaaccaat                                                                       <  2:129455‑M2/118‑79 (MQ=255)                                                                                                        acaAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCAtgtgggagcggccttgtgtcgcgatgggccgcaaagcggccccaaaatctcaaaggctgcgctcctgctccaaccaat                                                                       >  1:129455‑M2/1‑40 (MQ=255)                                                                                                                  tCCCACAGTGGCACTGCACACGCCGGCCCAtgtgggagcggccttgtgtcgcgatgggccgcaaagcggccccaaaatctcaaaggctgcgctcctgctccaaccaatccacaaaccgctcgatcaacgcccccccccgcttgcgcggcg                             <  2:348084‑M2/150‑121 (MQ=255)                                                                                                                    ccACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATc                           <  2:217601/150‑1 (MQ=255)                                                                                                                      acaGTGGCACTGCACACGCCGGCCCAtgtgggagcggc                                                                                                                                         <  2:143923‑M2/38‑13 (MQ=255)                                                                                                                      acaGTGGCACTGCACACGCCGGCCCAtgtgggagcggc                                                                                                                                         >  1:143923‑M2/1‑26 (MQ=255)                                                                                                                       caGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCACGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTg                        <  2:410894/150‑1 (MQ=255)                                                                                                                         gTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGcccc                                                                                                          <  2:189871/66‑1 (MQ=255)                                                                                                                         gTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGcccc                                                                                                          >  1:189871/1‑66 (MQ=255)                                                                                                                             cACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAg                  >  2:579999/1‑150 (MQ=255)                                                                                                                              aCTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCGGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAgc                 >  2:666161/1‑150 (MQ=255)                                                                                                                                tGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAgcgc               <  1:637966/150‑1 (MQ=255)                                                                                                                                 gCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGcgcc              <  2:715216/150‑1 (MQ=255)                                                                                                                                  cacaCGCCGGCCCAtgtgggagcggccttgtgtcgcgatgggccgcaaagcggccccaaaatctcaaagactgcgctcctgctccaaccaatccacaaacacctccatcaacgccccacgccgcttgcgcggaggtaagactacgtaata             <  2:336431‑M2/150‑137 (MQ=255)                                                                                                                                     acGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCaa          <  2:92997/150‑1 (MQ=255)                                                                                                                                         cGGCCCAtgtgggagcggccttgcgtcgcgatgggccgcaaagcggccccaaaatctcaaaggctgcgctcctgctccaaccaatccacaaaccgctcgat                                                       <  2:397817‑M2/101‑95 (MQ=255)                                                                                                                                         cGGCCCAtgtgggagcggccttgcgtcgcgatgggccgcaaagcggccccaaaatctcaaaggctgcgctcctgctccaaccaatccacaaaccgctcgat                                                       >  1:397817‑M2/1‑7 (MQ=255)                                                                                                                                         cGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGc      >  2:39831/1‑150 (MQ=255)                                                                                                                                             ccATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTcag  >  1:638428/1‑150 (MQ=255)                                                                                                                                               |                                                                                                                                                    CGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAG  >  NC_002947/90255‑90544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.