New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 90374	29 (0.980)	6 (0.230)	6/214	NT	16.4%	intergenic (+49/+73)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein
	?	NC_002947	= 90397	36 (1.400)					intergenic (+72/+50)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein

GCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTG  >  NC_002947/90225‑90522                                                                                                                                                      |                                                                                                                                                     gcTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCGAGCAGCGTGTGGCTTTGATCGAGCGGTTTGTGGATCCTTGGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACA                                                                                                                                                      <  1:376826‑M1/150‑1 (MQ=255)    cGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTg                                                                                                                                                   <  1:130565/150‑1 (MQ=255)    cGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTg                                                                                                                                                   <  1:165437/150‑1 (MQ=255)      gAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGc                                                                                                                                                 <  2:447705/150‑1 (MQ=255)          gcgGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTg                                                                                                                                             >  1:388338/1‑150 (MQ=255)               tATTACGTAGTCTTACCTCCGCGCAAGCGGCGTGGGGCGTTGATGGAGGTGTTTGTGGATTGGTTGGAGCAGGAGCGCAGTCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAtgggccggcgtgtg                                                                                                                                        <  2:336431‑M1/150‑15 (MQ=255)                        gTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGccc                                                                                                                                <  2:735655/149‑1 (MQ=255)                        gTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGccc                                                                                                                                >  1:735655/1‑149 (MQ=255)                               cgccgcGCAAGCGGGGGGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAtgggccggcgtgtgcagtgccactgtggga                                                                                                                        <  2:348084‑M1/150‑31 (MQ=255)                               cgccgcGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCAggtggga                                                                                                                        >  2:647880‑M2/1‑143 (MQ=255)                                  cgcgCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCAtgtgggagcg                                                                                                                     <  2:495353‑M2/150‑11 (MQ=255)                                       aggcggcgtgGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCAtgtgggagcggcctt                                                                                                                >  2:437927‑M2/3‑135 (MQ=255)                                               tGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTcgcg                                                                                                        >  1:101249/1‑150 (MQ=255)                                                 gggCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTg                                                                                                                                                   <  2:215388/105‑1 (MQ=255)                                                 gggCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTg                                                                                                                                                   >  1:215388/1‑105 (MQ=255)                                                   gCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGGCCACATCATGTGATATTTTGGGGCCGCTTTGCGATGTGGCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATgg                                                                                                    <  1:178181/150‑1 (MQ=255)                                                         aTCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACAtgggccg                                                                                                                                               >  1:397817‑M1/1‑94 (MQ=255)                                                         aTCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACAtgggccg                                                                                                                                               <  2:397817‑M1/101‑8 (MQ=255)                                                           cGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgca                                                                                            <  2:388338/150‑1 (MQ=255)                                                           cGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgca                                                                                            <  1:514164/150‑1 (MQ=255)                                                                 gTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATGTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGcc                                                                                      <  2:68051/150‑1 (MQ=255)                                                                         aTTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAtgggccggcgtgtgcagtgccactgtgggagcggccttgt                                                                                                              >  1:129455‑M1/1‑78 (MQ=255)                                                                         aTTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAtgggccggcgtgtgcagtgccactgtgggagcggccttgt                                                                                                              <  2:129455‑M1/118‑41 (MQ=255)                                                                               tggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGAc                                                                        <  1:528121/150‑1 (MQ=255)                                                                                     aGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTa                                                                           >  2:473476/1‑141 (MQ=255)                                                                                     aGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTa                                                                           <  1:473476/141‑1 (MQ=255)                                                                                     aGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGaa                                                                  <  1:82853/150‑1 (MQ=255)                                                                                         gcgcAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTc                                                              <  1:61881/150‑1 (MQ=255)                                                                                         gcgcAGCCGTGGAGACTTTCGGGCCGCTTTGCGGCCCATCGCCACCCAAGGCCGCCCCCACAGTGCCACTGCACACGCCGGCCCATGCGAGAGCCTCCTCGCGTCGCGATGCGCTGCGCAGCAGCCCCGGCACTCTAGCCCACGAAGCTc                                                              >  2:240954/1‑150 (MQ=255)                                                                                           gcAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAg                                                            <  2:436647/150‑1 (MQ=255)                                                                                            cAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAgg                                                           <  1:708306/150‑1 (MQ=255)                                                                                            cAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAgg                                                           >  2:708306/1‑150 (MQ=255)                                                                                               ccTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGCCACAAGGCCGCTCCCACAATGGCACTGCACACGCCGGCCCATGTGGGACCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTAAGGTgc                                                        >  2:507936/1‑150 (MQ=255)                                                                                                            ggggCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCa                                           >  1:217601/1‑150 (MQ=255)                                                                                                             gggCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCaa                                          <  2:795428/150‑1 (MQ=255)                                                                                                               gCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgcagca                                                                                         <  1:574691/101‑1 (MQ=255)                                                                                                               gCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgca                                                                                            <  2:582631/98‑1 (MQ=255)                                                                                                               gCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgca                                                                                            >  1:582631/1‑98 (MQ=255)                                                                                                               gCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGAGGGAGCGGCCTTGCGTCGCGATGGGCTGCgcagca                                                                                         >  2:574691/1‑101 (MQ=255)                                                                                                                        cGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtccagctcca                               >  1:92997/1‑150 (MQ=255)                                                                                                                              aTCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGccc                                                                                     <  1:393884/90‑1 (MQ=255)                                                                                                                              aTCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGccc                                                                                     >  2:393884/1‑90 (MQ=255)                                                                                                                              aTCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGt                         >  1:715216/1‑150 (MQ=255)                                                                                                                                  cgACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATAGAATGCACAGCAGCCCCGGCGATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTccac                     <  1:495353/150‑1 (MQ=255)                                                                                                                                   gACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCAtgtgggagcggcctt                                                                                                                <  2:145502‑M2/58‑16 (MQ=255)                                                                                                                                   gACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCAtgtgggagcggcctt                                                                                                                >  1:145502‑M2/1‑43 (MQ=255)                                                                                                                                      acaAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCAtgtgggagcggccttgtgtcgcgatgggccgcaaagcggccccaaaatctcaaaggctgcgctcctgctccaaccaat                                                 <  2:129455‑M2/118‑79 (MQ=255)                                                                                                                                      acaAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCAtgtgggagcggccttgtgtcgcgatgggccgcaaagcggccccaaaatctcaaaggctgcgctcctgctccaaccaat                                                 >  1:129455‑M2/1‑40 (MQ=255)                                                                                                                                        aaGGCCGCTCCCACAtgggccggcgtgtgcagtgccactgtgggagcggccttgtgtcgcgatgggccgcaaagcggccccaaaatctcaaaggctgcgctcctgctccaaccaatccacaaaccgctcgatcaacgccccacgccgcct               >  2:437927‑M1/1‑15 (MQ=255)                                                                                                                                        aaGGCCGCTCCCACAtgggccggcgtgtgcagtgccactgtgggagcggccttgtgtc                                                                                                           <  2:145502‑M1/58‑44 (MQ=255)                                                                                                                                        aaGGCCGCTCCCACAtgggccggcgtgtgcagtgccactgtgggagcggccttgtgtc                                                                                                           >  1:145502‑M1/1‑15 (MQ=255)                                                                                                                                           gCCGCTCCCACAtgggccggcgtgtgcagtgccactgt                                                                                                                            <  2:143923‑M1/38‑27 (MQ=255)                                                                                                                                           gCCGCTCCCACAtgggccggcgtgtgcagtgccactgt                                                                                                                            >  1:143923‑M1/1‑12 (MQ=255)                                                                                                                                             cGCTCCCACAtgggccggcgtgtgcagtgccactgtgggagcggccttgtgtcgcgatgggccgcaaagcggccccaaaatctcaaaggctgcgctcctgctccaaccaatccacaaaccgctcgatcaacgccccacgccgcttgcgcg          <  2:495353‑M1/150‑141 (MQ=255)                                                                                                                                                tCCCACCtgggccggcgtgtgcagtgccactgtgggagcggccttgtgtcgcgatgggccgcaaagcggccccaaaatctcaaaggctgcgctcctgctccaaccaatccacaaaccgctcgatcaacgccccacgccgcttgcgcggcg       >  2:647880‑M1/1‑7 (MQ=255)                                                                                                                                                tCCCACAGTGGCACTGCACACGCCGGCCCAtgtgggagcggccttgtgtcgcgatgggccgcaaagcggccccaaaatctcaaaggctgcgctcctgctccaaccaatccacaaaccgctcgatcaacgcccccccccgcttgcgcggcg       <  2:348084‑M2/150‑121 (MQ=255)                                                                                                                                                  ccACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATc     <  2:217601/150‑1 (MQ=255)                                                                                                                                                    acaGTGGCACTGCACACGCCGGCCCAtgtgggagcggc                                                                                                                   <  2:143923‑M2/38‑13 (MQ=255)                                                                                                                                                    acaGTGGCACTGCACACGCCGGCCCAtgtgggagcggc                                                                                                                   >  1:143923‑M2/1‑26 (MQ=255)                                                                                                                                                     caGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCACGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTg  <  2:410894/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTG  >  NC_002947/90225‑90522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.