New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	325064 =	46 (1.560)	4 (0.140)	4/234	NT	8.9%	coding (348/1320 nt)	oprQ	outer‑membrane porin D
	?	NC_002947	325089 =	38 (1.350)					coding (373/1320 nt)	oprQ	outer‑membrane porin D

TCAGGGTGCCGGTGAAGCTTTCTGGCAGCAGACGTGCATCGTCGTACTGCAGCACTGGCAGTGCTGGCATCTGGTCACCGTACTTCAGCACGGTGTTGGAAATGCGGAACTTCACAGCAGCACCACCACGCGCCAGGTTGTGCGGCGAGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/325218‑325064 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACC  >  NC_002947/325089‑325146                                                                                                                                                                                                                       TCAGGGTGCCGGTGAAGCTTTCTGGCAGCAGACGTGCATCGTCGTACTGCAGCACTGGCAGTGCTGGCATCTGGTCACCGTACTTCAGCACGGTGTTGGAAATGCGGAACTTCACAGCAGCACCACCACGCGCCAGGTTGTGCGGCGAGC                                                                 >  1:738518/1‑150                                                                                                                            CACCACGCGCCAGGTTGTGCGGCGAGCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAA             <  1:461505/79‑1                                                                                                                            CACCACGCGCCAGGTTGTGCGGCGAGCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAA             >  2:461505/1‑79                                                                                                                                ACGCGCCAGGTTGTGCGGCGAGCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACC  <  1:434560/86‑1                                                                                                                                ACGCGCCAGGTTGTGCGGCGAGCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACC  >  2:434560/1‑86                                                                                                                                                                                                                       TCAGGGTGCCGGTGAAGCTTTCTGGCAGCAGACGTGCATCGTCGTACTGCAGCACTGGCAGTGCTGGCATCTGGTCACCGTACTTCAGCACGGTGTTGGAAATGCGGAACTTCACAGCAGCACCACCACGCGCCAGGTTGTGCGGCGAGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/325218‑325064 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACC  >  NC_002947/325089‑325146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.