New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	325064 =	46 (1.560)	4 (0.140)	4/234	NT	8.9%	coding (348/1320 nt)	oprQ	outer‑membrane porin D
	?	NC_002947	325089 =	38 (1.350)					coding (373/1320 nt)	oprQ	outer‑membrane porin D

GCGTCGGTGTAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCAGAAAGCTTCACCGGCACCCTGATCACCTCCAAAGA  >  NC_002947/324946‑325231                                                                                                                                                |                                                                                                                                               gCGTCGGTGTAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCgtggtg                                                                                                                                          <  2:402486/150‑1 (MQ=255)          tAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCgtggtg                                                                                                                                          <  2:607911/141‑1 (MQ=255)          tAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCgtggtg                                                                                                                                          >  1:607911/1‑141 (MQ=255)           aGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCtgt                                                                                                                                <  1:580364/150‑1 (MQ=255)              cGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGaa                                                                                                                             <  2:123942/150‑1 (MQ=255)                           tACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTgctgct                                                                                                                                  >  2:387322/1‑132 (MQ=255)                           tACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCAGCACAACCTGGCGCGTGGTGGTgctgct                                                                                                                                  <  1:387322/132‑1 (MQ=255)                                    cgcCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCgtggtg                                                                                                                                          >  2:472537/1‑115 (MQ=255)                                    cgcCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCgtggtg                                                                                                                                          <  1:472537/115‑1 (MQ=255)                                        tGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGa                                                                                                   >  2:423967/1‑150 (MQ=255)                                                      ggCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAg                                                                                     >  2:289333/1‑150 (MQ=255)                                                        ccACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGAt                                                                                   <  2:740860/150‑1 (MQ=255)                                                        ccACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGAt                                                                                   <  1:289333/150‑1 (MQ=255)                                                             ggtcaccgtacttcagcacggtgttggaaatgcggaacttcacagcagcaccaccacgCGCCAGCTCGCCGCACAACCTGGCGCgt                                                                                                                                              <  1:434560‑M1/28‑1 (MQ=255)                                                             ggtcaccgtacttcagcacggtgttggaaatgcggaacttcacagcagcaccaccacgCGCCAGCTCGCCGCACAACCTGGCGCgt                                                                                                                                              >  2:434560‑M1/59‑86 (MQ=255)                                                                     ggcggcGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCa                                                                      >  2:588109/1‑150 (MQ=255)                                                                      gcggcgTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAg                                                                     <  1:66766/150‑1 (MQ=255)                                                                        ttcagcacggtgttggaaatgcggaacttcacagcagcaccaccacgCGCCAGCTCGCCGCACAACCTGGCGCgtggtg                                                                                                                                          <  1:461505‑M1/32‑1 (MQ=255)                                                                        ttcagcacggtgttggaaatgcggaacttcacagcagcaccaccacgCGCCAGCTCGCCGCACAACCTGGCGCgtggtg                                                                                                                                          >  2:461505‑M1/48‑79 (MQ=255)                                                                           gTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGGCAGtgctg                                                                <  2:516399/150‑1 (MQ=255)                                                                            tCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGtgctgc                                                               <  1:532890/150‑1 (MQ=255)                                                                              gACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAg                                                             >  2:299884/1‑150 (MQ=255)                                                                                cttcttCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGc                                                                                 <  1:646534/128‑1 (MQ=255)                                                                                cttcttCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGc                                                                                 >  2:646534/1‑128 (MQ=255)                                                                                       aaGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGt                                                                    >  1:501432/1‑134 (MQ=255)                                                                                       aaGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGt                                                                    <  2:501432/134‑1 (MQ=255)                                                                                         gCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATCTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGc                                                  <  2:573829/150‑1 (MQ=255)                                                                                          ccGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCa                                                 <  1:141389/150‑1 (MQ=255)                                                                                           cGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCAc                                                >  2:233432/1‑150 (MQ=255)                                                                                             cACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGt                                              >  2:738518/1‑150 (MQ=255)                                                                                              aCGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTc                                             >  2:162345/1‑150 (MQ=255)                                                                                                  aaCCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTctgct                                         >  1:363625/1‑150 (MQ=255)                                                                                                   accaccAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGc                                                                                 <  2:300030/109‑1 (MQ=255)                                                                                                   accaccAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGc                                                                                 >  1:300030/1‑109 (MQ=255)                                                                                                      accaATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGAAGCGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCa                                     <  1:608167/150‑1 (MQ=255)                                                                                                          aTGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCAGaaa                                 <  1:162345/150‑1 (MQ=255)                                                                                                                caccacgcgccaggttgtgcggcgagctggcgCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGaa                                                                                                  <  1:461505‑M2/47‑1 (MQ=255)                                                                                                                caccacgcgccaggttgtgcggcgagctggcgCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGaa                                                                                                  >  2:461505‑M2/33‑79 (MQ=255)                                                                                                                aaGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCAGAAAGCTTcc                           >  2:641481/1‑149 (MQ=255)                                                                                                                   gCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCAGAAAGCTTCACCg                        <  2:667133/150‑1 (MQ=255)                                                                                                                    acgcgccaggttgtgcggcgagctggcgCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGAcc                                                                                       <  1:434560‑M2/58‑1 (MQ=255)                                                                                                                    acgcgccaggttgtgcggcgagctggcgCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGAcc                                                                                       >  2:434560‑M2/29‑86 (MQ=255)                                                                                                                     aaCGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCAGAAAGCTTCACCg                        >  1:307461/1‑148 (MQ=255)                                                                                                                     aaCGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCAGAAAGCTTCACCg                        <  2:307461/148‑1 (MQ=255)                                                                                                                            GCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCAGAAAGCTTCACCGGCACCCTGa               >  1:738518‑M1/1‑150 (MQ=255)                                                                                                                                    cacaACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCa                                                                               <  2:356222/78‑1 (MQ=255)                                                                                                                                    cacaACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCa                                                                               >  1:356222/1‑78 (MQ=255)                                                                                                                                       aaCCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCATAAAGCTTCACCGGCACCCTGATCACCTCCaaa    <  2:363625/150‑1 (MQ=255)                                                                                                                                         ccTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCAGAAAGCTTCACCGGCACCCTGATCACCTCCAAaga  >  2:115628/1‑150 (MQ=255)                                                                                                                                                |                                                                                                                                               GCGTCGGTGTAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCAGAAAGCTTCACCGGCACCCTGATCACCTCCAAAGA  >  NC_002947/324946‑325231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.