New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	325064 =	46 (1.560)	4 (0.140)	4/234	NT	8.9%	coding (348/1320 nt)	oprQ	outer‑membrane porin D
	?	NC_002947	325089 =	38 (1.350)					coding (373/1320 nt)	oprQ	outer‑membrane porin D

TTCTCCTCCGGTTTCACCCAAGGCACCGTTGGCGTCGGTGTAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCAGAAAGCTTCACCG  >  NC_002947/324915‑325209                                                                                                                                                      |                                                                                                                                                  ttCTCCTCCGGTTTCACCCAAGGCACCGTTGGCGTCGGTGTAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAAc                                                                                                                                                   >  2:217361/1‑150 (MQ=255)        ccGGTTTCACCCAAGGCACCGTTGGCGTCGGTGTAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCt                                                                                                                                            >  1:402486/1‑150 (MQ=255)          ggTTTCACCCAAGGCACCGTTGGCGTCGGTGTAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTcg                                                                                                                                          >  2:532890/1‑150 (MQ=255)                 cccAAGGCACCGTTGGCGTCGGTGTAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGcaca                                                                                                                                   >  2:518107/1‑150 (MQ=255)                  ccaaatcACGGTTGGCGTGGTTTAAGATACCTTCGGCCTGTACGCCGTGCGCCTCGATGACGGCCAAGCACAAAACGGTGGTAGCGGCGTCAACTTATTCAAACCACACGAAACCACCAATGCCGAAGGCAACTCCAACTCGACGcacat                                                                                                                                  >  2:293897/7‑149 (MQ=255)                    aaGGCACCGTTGGCGTCGGTGTAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAAcc                                                                                                                                >  1:573829/1‑150 (MQ=255)                    aaGGCACCGTTGGCGTCGGTGTAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAAcc                                                                                                                                >  1:392945/1‑150 (MQ=255)                      ggCACCGTTGGCGTCGGTGTAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTg                                                                                                                              <  1:140929/150‑1 (MQ=255)                      ggCACCGTTGGCGTCGGTGTAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTg                                                                                                                              <  2:392945/150‑1 (MQ=255)                      ggCACCGTTGGCGTCGGTGTAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTg                                                                                                                              >  2:66766/1‑150 (MQ=255)                             ttGGCGTCGGTGTAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTg                                                                                                                              >  1:697583/1‑143 (MQ=255)                             ttGGCGTCGGTGTAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTg                                                                                                                              <  2:697583/143‑1 (MQ=255)                                gCGTCGGTGTAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCgtggtg                                                                                                                    <  2:402486/150‑1 (MQ=255)                                      gtgtAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACaa                                                                                                                                  >  2:295090/1‑130 (MQ=255)                                      gtgtAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACaa                                                                                                                                  <  1:295090/130‑1 (MQ=255)                                         tAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCgtggtg                                                                                                                    <  2:607911/141‑1 (MQ=255)                                         tAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCgtggtg                                                                                                                    >  1:607911/1‑141 (MQ=255)                                          aGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCtgt                                                                                                          <  1:580364/150‑1 (MQ=255)                                             cGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGaa                                                                                                       <  2:123942/150‑1 (MQ=255)                                                          tACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTgctgct                                                                                                            >  2:387322/1‑132 (MQ=255)                                                          tACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCAGCACAACCTGGCGCGTGGTGGTgctgct                                                                                                            <  1:387322/132‑1 (MQ=255)                                                                   cgcCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCgtggtg                                                                                                                    <  1:472537/115‑1 (MQ=255)                                                                   cgcCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCgtggtg                                                                                                                    >  2:472537/1‑115 (MQ=255)                                                                       tGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGa                                                                             >  2:423967/1‑150 (MQ=255)                                                                                     ggCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAg                                                               >  2:289333/1‑150 (MQ=255)                                                                                       ccACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGAt                                                             <  2:740860/150‑1 (MQ=255)                                                                                       ccACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGAt                                                             <  1:289333/150‑1 (MQ=255)                                                                                            ggtcaccgtacttcagcacggtgttggaaatgcggaacttcacagcagcaccaccacgCGCCAGCTCGCCGCACAACCTGGCGCgt                                                                                                                        >  2:434560‑M1/59‑86 (MQ=255)                                                                                            ggtcaccgtacttcagcacggtgttggaaatgcggaacttcacagcagcaccaccacgCGCCAGCTCGCCGCACAACCTGGCGCgt                                                                                                                        <  1:434560‑M1/28‑1 (MQ=255)                                                                                                    ggcggcGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCa                                                >  2:588109/1‑150 (MQ=255)                                                                                                     gcggcgTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAg                                               <  1:66766/150‑1 (MQ=255)                                                                                                       ttcagcacggtgttggaaatgcggaacttcacagcagcaccaccacgCGCCAGCTCGCCGCACAACCTGGCGCgtggtg                                                                                                                    <  1:461505‑M1/32‑1 (MQ=255)                                                                                                       ttcagcacggtgttggaaatgcggaacttcacagcagcaccaccacgCGCCAGCTCGCCGCACAACCTGGCGCgtggtg                                                                                                                    >  2:461505‑M1/48‑79 (MQ=255)                                                                                                          gTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGGCAGtgctg                                          <  2:516399/150‑1 (MQ=255)                                                                                                           tCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGtgctgc                                         <  1:532890/150‑1 (MQ=255)                                                                                                             gACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAg                                       >  2:299884/1‑150 (MQ=255)                                                                                                               cttcttCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGc                                                           <  1:646534/128‑1 (MQ=255)                                                                                                               cttcttCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGc                                                           >  2:646534/1‑128 (MQ=255)                                                                                                                      aaGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGt                                              >  1:501432/1‑134 (MQ=255)                                                                                                                      aaGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGt                                              <  2:501432/134‑1 (MQ=255)                                                                                                                        gCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATCTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGc                            <  2:573829/150‑1 (MQ=255)                                                                                                                         ccGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCa                           <  1:141389/150‑1 (MQ=255)                                                                                                                          cGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCAc                          >  2:233432/1‑150 (MQ=255)                                                                                                                            cACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGt                        >  2:738518/1‑150 (MQ=255)                                                                                                                             aCGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTc                       >  2:162345/1‑150 (MQ=255)                                                                                                                                 aaCCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTctgct                   >  1:363625/1‑150 (MQ=255)                                                                                                                                  accaccAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGc                                                           >  1:300030/1‑109 (MQ=255)                                                                                                                                  accaccAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGc                                                           <  2:300030/109‑1 (MQ=255)                                                                                                                                     accaATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGAAGCGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCa               <  1:608167/150‑1 (MQ=255)                                                                                                                                         aTGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCAGaaa           <  1:162345/150‑1 (MQ=255)                                                                                                                                               aaGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCAGAAAGCTTcc     >  2:641481/1‑149 (MQ=255)                                                                                                                                                  gCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCAGAAAGCTTCACCg  <  2:667133/150‑1 (MQ=255)                                                                                                                                                    aaCGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCAGAAAGCTTCACCg  >  1:307461/1‑148 (MQ=255)                                                                                                                                                    aaCGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCAGAAAGCTTCACCg  <  2:307461/148‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                  TTCTCCTCCGGTTTCACCCAAGGCACCGTTGGCGTCGGTGTAGACGCATTCGGCCTGTACGCCGTGCGCCTGGATGGCGGCAAAGGCCACAACGGTGGTGGCGGCGTCGACTTCTTCAAGCCGCACGAAACCACCAATGCCGAAGGCAACGCCAGCTCGCCGCACAACCTGGCGCGTGGTGGTGCTGCTGTGAAGTTCCGCATTTCCAACACCGTGCTGAAGTACGGTGACCAGATGCCAGCACTGCCAGTGCTGCAGTACGACGATGCACGTCTGCTGCCAGAAAGCTTCACCG  >  NC_002947/324915‑325209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.