New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 661541	32 (1.080)	4 (0.160)	4/214	NT	11.1%	intergenic (+48/+79)	PP_0568/PP_0569	hypothetical protein/MATE efflux family protein
	?	NC_002947	= 661574	36 (1.400)					intergenic (+81/+46)	PP_0568/PP_0569	hypothetical protein/MATE efflux family protein

GGAGGATGTGCGAGCGGTGGCCCGCTACATCATCGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/661388‑661541 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggccgctcccacaTGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACAGTCCCAATGGGGATACTCGCCAGCCCGCCGCACGAGGCCCGCCCGAATGGG  <  NC_002947/661574‑661428                                                                                                                                                                                                                                                                                                               GGAGGATGTGCGAGCGGTGGCCCGCTACATCATCGCCAACCCCCTTCGGGCGCGTCTGGTGCTGCGGTCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCC                                                                                                                                                         <  1:693336/150‑1   AGGATGTGCGAGCGGTGGCCCGCTACATCATCGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCA                                                                                                                                                       <  1:549881/150‑1     GATGTGCGAGCGGTGGCCCGCTACATCATCGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGCCACAAGGCCGCTCCCACA                                                                                                                                                     >  1:398634/1‑150                      CCGCTACATCATCGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAG                                                                                                                                                                 <  1:389958/121‑1                      CCGCTACATCATCGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAG                                                                                                                                                                 >  2:389958/1‑121                                                                                   CATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGAAATGA                                                                                       <  1:790920/134‑1                                                                                   CATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGAAATGA                                                                                       >  2:790920/1‑134                                                                                              TGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGC                                                                                                           <  1:150861/103‑1                                                                                              TGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGC                                                                                                           >  2:150861/1‑103                                                                                                                                               GCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACAGTCCCAATGGGGATACTCGCCAGCCCGCCGCACGAGGCCCGC           >  1:622456/1‑150                                                                                                                                               GCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACAGTCCCAATGGGGATACTCGCCAGCCCGCCGCACGAGGCCCGC           >  1:680703/1‑150                                                                                                                                                        ACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACAGTCNCAATGGNGATACTCGCCAGNCCGCCGCACGAGGCCCGCCCGAATGGG  <  1:631407/150‑1                                                                                                                                                        ACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACAGTCCCAATGGGGATACTCGCCAGCCCGCCGCACGAGGCCCGCCCGAATGGG  <  2:484171/150‑1                                                                                                                                                        ACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGACCTCACATGCTCACAGCCATACACAGTCCAAATGGGGATACTCGCCAGCCCGCCGCACGAGGCCCGCCCGAATGGG  >  1:52359/1‑150                                                                                                                                                                                                                                                                                                               GGAGGATGTGCGAGCGGTGGCCCGCTACATCATCGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/661388‑661541 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggccgctcccacaTGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACAGTCCCAATGGGGATACTCGCCAGCCCGCCGCACGAGGCCCGCCCGAATGGG  <  NC_002947/661574‑661428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.