New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 661541	32 (1.080)	4 (0.160)	4/214	NT	11.1%	intergenic (+48/+79)	PP_0568/PP_0569	hypothetical protein/MATE efflux family protein
	?	NC_002947	= 661574	36 (1.400)					intergenic (+81/+46)	PP_0568/PP_0569	hypothetical protein/MATE efflux family protein

AACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGT  >  NC_002947/661425‑661723                                                                                                                                                      |                                                                                                                                                      aaCCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCa                                                                                                                                                       >  1:273654/1‑150 (MQ=255)    cccATTCGGGCGGGCCTCGTGCGGCGGNCTGGCGAGTATCNCCATTGNGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgt                                                                                                                                                    <  1:631407‑M2/150‑4 (MQ=255)    cccATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTTGGACTGTGTATGGCTGTGAGCATGTGAGGTCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgt                                                                                                                                                    >  1:52359‑M2/1‑147 (MQ=255)    cccATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgt                                                                                                                                                    <  2:484171‑M2/150‑4 (MQ=255)             gcgggcCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgtgggagcggc                                                                                                                                           >  1:622456‑M2/1‑138 (MQ=255)             gcgggcCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgtgggagcggc                                                                                                                                           >  1:680703‑M2/1‑138 (MQ=255)                  cttCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGc                                                                                                                                      >  2:396226/3‑150 (MQ=255)                  ccTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGc                                                                                                                                      >  1:213977/1‑150 (MQ=255)                       tGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTAACCATGTCATGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGAAACCTCGGAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTcgc                                                                                                                                 <  1:618919/150‑1 (MQ=255)                               gCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGcc                                                                                                                         <  1:396226/150‑1 (MQ=255)                                 tGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGc                                                                                                                       >  2:248553/1‑150 (MQ=255)                                   gCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCaa                                                                                                                     >  2:42451/1‑150 (MQ=255)                                         aTCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGc                                                                                                               <  1:161582/150‑1 (MQ=255)                                         aTCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGc                                                                                                               <  2:213977/150‑1 (MQ=255)                                          tCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGACTTGCGTCGCGATGGGCCGCAAAGCGGcc                                                                                                              <  2:776979/150‑1 (MQ=255)                                             ccATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCa                                                                                                           >  1:740067/1‑150 (MQ=255)                                                     aCTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGa                                                                                                   <  1:484171/150‑1 (MQ=255)                                                        gtgtATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGacac                                                                                                <  1:248553/150‑1 (MQ=255)                                                        gtgtATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGacac                                                                                                <  2:740067/150‑1 (MQ=255)                                                            aTGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCTCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACcaca                                                                                            >  1:63097/1‑150 (MQ=255)                                                                 tgtgAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGtct                                                                                       >  1:131758/1‑150 (MQ=255)                                                                     aGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGAAGCGACCTGGCGAGGAGATGTGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTctctct                                                                                   >  1:451598/1‑150 (MQ=255)                                                                      gCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTctg                                                                                  <  2:631407/150‑1 (MQ=255)                                                                      gCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTctg                                                                                  <  2:273654/150‑1 (MQ=255)                                                                       cATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCa                                                                                                           <  1:194550/124‑1 (MQ=255)                                                                       cATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCa                                                                                                           >  2:194550/1‑124 (MQ=255)                                                                               ggCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCg                                                                         >  2:732030/1‑150 (MQ=255)                                                                                  ttCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGa                                                                                                   >  1:273964/1‑121 (MQ=255)                                                                                  ttCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGa                                                                                                   <  2:273964/121‑1 (MQ=255)                                                                                       ccTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCacccaa                                                                 >  2:494087/1‑150 (MQ=255)                                                                                        cTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCacccaac                                                                <  2:131758/150‑1 (MQ=255)                                                                                         tCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagccatacacagtcccaatg                                                                               >  2:790920‑M2/1‑62 (MQ=255)                                                                                         tCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagccatacacagtcccaatg                                                                               <  1:790920‑M2/134‑73 (MQ=255)                                                                                                       aaGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGacac                                                                                                <  1:355671/103‑1 (MQ=255)                                                                                                       aaGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGacac                                                                                                >  2:355671/1‑103 (MQ=255)                                                                                                             gCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagccataca                                                                                          >  2:150861‑M2/1‑42 (MQ=255)                                                                                                             gCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagccataca                                                                                          <  1:150861‑M2/103‑62 (MQ=255)                                                                                                                 ccACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAAc                                       >  1:477014/1‑150 (MQ=255)                                                                                                                   acaGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCgc                                                                                                   >  2:127231/1‑87 (MQ=255)                                                                                                                   acaGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGa                                                                                                   <  1:127231/88‑1 (MQ=255)                                                                                                                     aGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCa                                   >  1:490758/1‑150 (MQ=255)                                                                                                                     aGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCa                                   >  2:227862/1‑150 (MQ=255)                                                                                                                              gAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGTGCTTTCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCaa                          <  2:63097/150‑1 (MQ=255)                                                                                                                              gAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCaa                          >  1:545077/1‑150 (MQ=255)                                                                                                                                  gCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCAGGAACCCAAGaaa                      >  2:310995/1‑150 (MQ=255)                                                                                                                                          aCCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATcc              >  2:565721/1‑150 (MQ=255)                                                                                                                                              gCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACaa          <  2:477014/150‑1 (MQ=255)                                                                                                                                              gCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACaa          >  1:240295/1‑150 (MQ=255)                                                                                                                                                    ccATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGtctctc                                                                                    <  2:407500/70‑1 (MQ=255)                                                                                                                                                    ccATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGtctctc                                                                                    >  1:407500/1‑70 (MQ=255)                                                                                                                                                    ccATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATg    <  1:732030/150‑1 (MQ=255)                                                                                                                                                    ccATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATg    >  2:647651/1‑150 (MQ=255)                                                                                                                                                      aTGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAAc                              >  1:787942/1‑122 (MQ=255)                                                                                                                                                      aTGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAAc                              <  2:787942/122‑1 (MQ=255)                                                                                                                                                      aTGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGt  >  2:161676/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      AACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGT  >  NC_002947/661425‑661723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.