| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 661541 | 32 (1.080) | 4 (0.160) | 4/214 | NT | 11.1% | intergenic (+48/+79) | PP_0568/PP_0569 | hypothetical protein/MATE efflux family protein |
| ? | NC_002947 | = 661574 | 36 (1.400) | intergenic (+81/+46) | PP_0568/PP_0569 | hypothetical protein/MATE efflux family protein | |||||
GATGTGCGAGCGGTGGCCCGCTACATCATCGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCA > NC_002947/661392‑661690 | gaTGTGCGAGCGGTGGCCCGCTACATCATCGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGCCACAAGGCCGCTCCCACA > 1:398634‑M1/1‑150 (MQ=255) ggTGGCCCGCTACATCATCGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGaa < 2:237424/150‑1 (MQ=255) gTGGCCCGCTACATCATCGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGaaa < 2:19239/150‑1 (MQ=255) ccGCTACATCATCGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAgg > 2:279112/1‑150 (MQ=255) atcatcGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGAccc < 2:251884/150‑1 (MQ=255) aaCCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCa > 1:273654/1‑150 (MQ=255) cccATTCGGGCGGGCCTCGTGCGGCGGNCTGGCGAGTATCNCCATTGNGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgt < 1:631407‑M2/150‑4 (MQ=255) cccATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTTGGACTGTGTATGGCTGTGAGCATGTGAGGTCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgt > 1:52359‑M2/1‑147 (MQ=255) cccATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgt < 2:484171‑M2/150‑4 (MQ=255) gcgggcCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgtgggagcggc > 1:680703‑M2/1‑138 (MQ=255) gcgggcCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgtgggagcggc > 1:622456‑M2/1‑138 (MQ=255) cttCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGc > 2:396226/3‑150 (MQ=255) ccTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGc > 1:213977/1‑150 (MQ=255) tGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTAACCATGTCATGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGAAACCTCGGAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTcgc < 1:618919/150‑1 (MQ=255) gCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGcc < 1:396226/150‑1 (MQ=255) tGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGc > 2:248553/1‑150 (MQ=255) gCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCaa > 2:42451/1‑150 (MQ=255) aTCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGc < 2:213977/150‑1 (MQ=255) aTCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGc < 1:161582/150‑1 (MQ=255) tCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGACTTGCGTCGCGATGGGCCGCAAAGCGGcc < 2:776979/150‑1 (MQ=255) ccATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCa > 1:740067/1‑150 (MQ=255) cATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAtgggatagcgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaatga < 1:790920‑M1/134‑63 (MQ=255) cATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAtgggatagcgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaatga > 2:790920‑M1/1‑72 (MQ=255) aCTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGa < 1:484171/150‑1 (MQ=255) gtgtATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGacac < 1:248553/150‑1 (MQ=255) gtgtATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGacac < 2:740067/150‑1 (MQ=255) tgtATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAtgggatagcgggtcggcctgctttcgcggtcactgtgggagc < 1:150861‑M1/103‑43 (MQ=255) tgtATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAtgggatagcgggtcggcctgctttcgcggtcactgtgggagc > 2:150861‑M1/1‑61 (MQ=255) aTGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCTCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACcaca > 1:63097/1‑150 (MQ=255) tgtgAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGtct > 1:131758/1‑150 (MQ=255) aGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGAAGCGACCTGGCGAGGAGATGTGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTctctct > 1:451598/1‑150 (MQ=255) gCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTctg < 2:631407/150‑1 (MQ=255) gCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTctg < 2:273654/150‑1 (MQ=255) cATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCa < 1:194550/124‑1 (MQ=255) cATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCa > 2:194550/1‑124 (MQ=255) ggCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCg > 2:732030/1‑150 (MQ=255) ttCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGa > 1:273964/1‑121 (MQ=255) ttCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGa < 2:273964/121‑1 (MQ=255) ccTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCacccaa > 2:494087/1‑150 (MQ=255) cTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCacccaac < 2:131758/150‑1 (MQ=255) tCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagccatacacagtcccaatg > 2:790920‑M2/1‑62 (MQ=255) tCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagccatacacagtcccaatg < 1:790920‑M2/134‑73 (MQ=255) aaGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGacac > 2:355671/1‑103 (MQ=255) aaGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGacac < 1:355671/103‑1 (MQ=255) gCCGCTCCCACAtgggatagcgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagccatacacagtcccaatggggatactcgccagcccgccgcacgaggcccgc > 1:622456‑M1/1‑12 (MQ=255) gCCGCTCCCACAtgggatagcgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagccatacacagtcccaatggggatactcgccagcccgccgcacgaggcccgc > 1:680703‑M1/1‑12 (MQ=255) gCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagccataca > 2:150861‑M2/1‑42 (MQ=255) gCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCAtgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagccataca < 1:150861‑M2/103‑62 (MQ=255) ccACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAAc > 1:477014/1‑150 (MQ=255) acatgggatagcgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagccatacacagtcncaatggngatactcgccagnccgccgcacgaggcccgcccgaatggg < 1:631407‑M1/150‑148 (MQ=255) acatgggatagcgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagccatacacagtcccaatggggatactcgccagcccgccgcacgaggcccgcccgaatggg < 2:484171‑M1/150‑148 (MQ=255) acatgggatagcgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaatgagggcgaagacctcacatgctcacagccatacacagtccaaatggggatactcgccagcccgccgcacgaggcccgcccgaatggg > 1:52359‑M1/1‑3 (MQ=255) acaGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCgc > 2:127231/1‑87 (MQ=255) acaGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGa < 1:127231/88‑1 (MQ=255) aGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCa > 1:490758/1‑150 (MQ=255) aGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCa > 2:227862/1‑150 (MQ=255) | GATGTGCGAGCGGTGGCCCGCTACATCATCGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCA > NC_002947/661392‑661690 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |