New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1022041 = | 43 (1.460) | 4 (0.140) | 4/232 | NT | 8.7% | intergenic (‑52/+40) | dppB/dppA‑I | dipeptide ABC transporter permease/dipeptide ABC transporter substrate‑binding protein |
? | NC_002947 | 1022070 = | 43 (1.540) | intergenic (‑81/+11) | dppB/dppA‑I | dipeptide ABC transporter permease/dipeptide ABC transporter substrate‑binding protein |
TGGATCAGCATGGCTCATCCAAAGATGTTCACCGCCATGCGTGACAACGTGGAGGGCTACGTGATCAACCCTCTGACCAACAACAACTTCGCCACCACCAAGGTGAAGTAGAACAACAACGACCGCCGGCCACCCACACGGGGACCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1022191‑1022041 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcggTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGATCCAGGGTTGTTCGTCATCGTACACTTT > NC_002947/1022070‑1022215 TGGATCAGCATGGCTCATCCAAAGATGTTCACCGCCATGCGTGACAACGTGGAGGGCTACGTGATCAACCCTCTGACCAACAACAACTTCGCCACCACCAAGGTGAAGTAGAACAACAACGACCGCCGGCCACCCACACGGGGACCGGCG > 2:81199/1‑150 GCTACGTGATCAACCCTCTGACCAACAACAACTTCGCCACCACCAAGGTGAAGTAGAACAACAACGACCGCCGGCCACCCACACGGGGACCGG < 1:220954/93‑1 GCTACGTGATCAACCCTCTGACCAACAACAACTTCGCCACCACCAAGGTGAAGTAGAACAACAACGACCGCCGGCCACCCACACGGGGACCGG > 2:220954/1‑93 GAACAACAACGACCGCCGGCCACCCACACGGGGACCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTT > 1:726540/1‑142 GAACAACAACGACCGCCGGCCACCCACACGGGGACCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTT < 2:726540/142‑1 ACGACCGCCGGCCACCCACACGGGGACCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGT < 1:171427/88‑1 ACGACCGCCGGCCACCCACACGGGGACCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGT > 2:171427/1‑88 CGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGATCCAGGGTTGTTCGTCATCGTACACT > 2:255023/1‑150 GCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTTTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGATCCAGGGTTGTTCGTCATCGTACACTTT > 2:355246/1‑150 TGGATCAGCATGGCTCATCCAAAGATGTTCACCGCCATGCGTGACAACGTGGAGGGCTACGTGATCAACCCTCTGACCAACAACAACTTCGCCACCACCAAGGTGAAGTAGAACAACAACGACCGCCGGCCACCCACACGGGGACCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1022191‑1022041 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcggTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGATCCAGGGTTGTTCGTCATCGTACACTTT > NC_002947/1022070‑1022215 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |