New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1362978	15 (0.510)	5 (0.180)	5/228	NT	22.3%	intergenic (+15/‑336)	phoQ/dctA‑I	sensor protein/C4‑dicarboxylate transport protein
	?	NC_002947	= 1363010	21 (0.770)					intergenic (+47/‑304)	phoQ/dctA‑I	sensor protein/C4‑dicarboxylate transport protein

GGCTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1362824‑1362978 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgccGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGGCTAAGAATCAATCCAGGTGGAAGGTGATCCTGAACGCAGCGCCCCCCAGTGGCGAATCGCCAAGGCTCAGCTCGGCGTCATAGCTGTCGACGATATCCTTGACCAC  <  NC_002947/1363010‑1362865                                                                                                                                                                                                                                                                                                               GGCTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCT                                                                                                                                                         >  2:696436/1‑150                   CGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGC                                                                                                                                                     <  1:658581/136‑1                   CGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGC                                                                                                                                                     >  2:658581/1‑136                           GGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGACCT                                                                                                                               >  1:397450/1‑150                                        CAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGG                                                                                                                  <  2:397450/150‑1                                                      ATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAG                                                                                                                                                            <  1:54239/94‑1                                                      ATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAG                                                                                                                                                            >  2:54239/1‑94                                                                 CTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGG                                                                                                            >  1:195102/1‑131                                                                 CTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGG                                                                                                            <  2:195102/131‑1                                                                                                                                    CTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCTAAGAATCAATCCAGGTGGAAGGTGATCCTGAACGCAGCGCCCCCCAGTGGCGAATCGCCAAGGCTCAGCTCGGCGTCATAGCTG                      >  1:485017/1‑150                                                                                                                                                     CTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGGCTAAGAATCAATCCAGGTGGAAGGTGATCCTGAACGCAGCGCCCCCCAGTGGCGAATCGCCAAGGCTCAGCTCGGCGTCAT                           <  1:568612/128‑1                                                                                                                                                     CTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGGCTAAGAATCAATCCAGGTGGAAGGTGATCCTGAACGCAGCGCCCCCCAGTGGCGAATCGCCAAGGCTCAGCTCGGCGTCAT                           >  2:568612/1‑128                                                                                                                                                        TGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGGCTAAGAATCAATCCAGGTGGAAGGTGATCCTGAACGCAGCGCCCCCCAGTGGCGAATCGCCAAGGCTCAGCTCGGCGTCATAGCTGTCGACGATATCCTTGACCAC  >  1:381878/1‑150                                                                                                                                                                                                                                                                                                               GGCTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1362824‑1362978 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgccGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGGCTAAGAATCAATCCAGGTGGAAGGTGATCCTGAACGCAGCGCCCCCCAGTGGCGAATCGCCAAGGCTCAGCTCGGCGTCATAGCTGTCGACGATATCCTTGACCAC  <  NC_002947/1363010‑1362865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.