New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1362978	15 (0.510)	5 (0.180)	5/228	NT	22.3%	intergenic (+15/‑336)	phoQ/dctA‑I	sensor protein/C4‑dicarboxylate transport protein
	?	NC_002947	= 1363010	21 (0.770)					intergenic (+47/‑304)	phoQ/dctA‑I	sensor protein/C4‑dicarboxylate transport protein

ACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTAT  >  NC_002947/1362830‑1363126                                                                                                                                                     |                                                                                                                                                     aCAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCa                                                                                                                                                     >  2:687140/1‑150 (MQ=255)             cGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAg                                                                                                                                         <  1:687140/150‑1 (MQ=255)                   agggcaTCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGACGAGCTGAGACTTGGCGATTCGCGACGTTGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAAt                                                                                                                                   >  1:495523/1‑150 (MQ=255)                     ggcaTCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCggcccattcgcggattgacct                                                                                                                                 >  1:397450‑M1/1‑129 (MQ=255)                                  cAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCggcccattcgcggattgacctgcgaacgggctgg                                                                                                                    <  2:397450‑M1/150‑35 (MQ=255)                                    gTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCggca                                                                                                                  >  1:381878‑M2/1‑146 (MQ=255)                                                        cAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTggcacaggctaagaatcaatccag                                                                                              >  1:485017‑M2/1‑126 (MQ=255)                                                           cTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCggcccattcgcggattgacctgcgaacgggctggcacagg                                                                                                              >  1:195102‑M1/1‑91 (MQ=255)                                                           cTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCggcccattcgcggattgacctgcgaacgggctggcacagg                                                                                                              <  2:195102‑M1/131‑41 (MQ=255)                                                            tATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGAtt                                                                                          >  1:200813/1‑150 (MQ=255)                                                             aTGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCggcacag                                                                                                               <  1:568612‑M2/128‑8 (MQ=255)                                                             aTGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCggcacag                                                                                                               >  2:568612‑M2/1‑121 (MQ=255)                                                                 cGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATcc                                                                                                        <  1:153613/131‑1 (MQ=255)                                                                 cGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATcc                                                                                                        >  2:153613/1‑131 (MQ=255)                                                                  gCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGcc                                                                                    <  2:200813/150‑1 (MQ=255)                                                                               ttGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGGTCGCAGGTCAATCTGCGAATGGGCCGGCACAGGCAATCTACAAAGGGCGGATTTCCGCCATTCCTCCTTGtg                                                                       >  2:515906/1‑149 (MQ=255)                                                                                      ttCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTc                                                                >  2:636416/1‑150 (MQ=255)                                                                                            aCTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCAt                                                          <  2:495523/150‑1 (MQ=255)                                                                                                                ggATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATc                                      >  1:405062/1‑150 (MQ=255)                                                                                                                              cTGGATTGATTCTTAGCCTGTGCCagcccgttcgcaggtcaatccgcgaatgggccggcacaggctaagaatcaatccaggtggaaggtgatcctgaacgcagcgccccccagtggcgaatcgccaaggctcagctcggcgtcatagctg                        >  1:485017‑M1/1‑24 (MQ=255)                                                                                                                                   ttgattCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGccc                   >  1:596145/1‑150 (MQ=255)                                                                                                                                        tCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCGGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCg              >  1:303506/1‑150 (MQ=255)                                                                                                                                            aGCCTGTGCCAGCCCGTTCGCAGGTCAATCTGCCAATGCGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTgg          <  2:303506/150‑1 (MQ=255)                                                                                                                                              ccTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCggcacaggctaagaatcaatccaggtggaaggtgatcctgaacgcagcgccccccagtggcgaatcgccaaggctcagctcggcgtcatag                           <  2:195102‑M2/131‑92 (MQ=255)                                                                                                                                              ccTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCggcacaggctaagaatcaatccaggtggaaggtgatcctgaacgcagcgccccccagtggcgaatcgccaaggctcagctcggcgtcatag                           >  1:195102‑M2/1‑40 (MQ=255)                                                                                                                                              ccTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGc        <  2:405062/150‑1 (MQ=255)                                                                                                                                               cTGTGCCggcccattcgcggattgacctgcgaacgggctggcacaggctaagaatcaatccaggtggaaggtgatcctgaacgcagcgccccccagtggcgaatcgccaaggctcagctcggcgtcat                             >  2:568612‑M1/1‑7 (MQ=255)                                                                                                                                               cTGTGCCggcccattcgcggattgacctgcgaacgggctggcacaggctaagaatcaatccaggtggaaggtgatcctgaacgcagcgccccccagtggcgaatcgccaaggctcagctcggcgtcat                             <  1:568612‑M1/128‑122 (MQ=255)                                                                                                                                                tgtgCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCAt      <  2:596145/150‑1 (MQ=255)                                                                                                                                                  tgCCggcccattcgcggattgacctgcgaacgggctggcacaggctaagaatcaatccaggtggaaggtgatcctgaacgcagcgccccccagtggcgaatcgccaaggctcagctcggcgtcatagctgtcgacgatatccttgaccac    >  1:381878‑M1/1‑4 (MQ=255)                                                                                                                                                    ccAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCggcacaggctaagaatcaatccaggtggaaggtgatcctgaacgcagcgccccccagtggcgaatcgccaaggctcagctcggcgtcatagctgtcgacgatatccttgaccactg  <  2:397450‑M2/150‑117 (MQ=255)                                                                                                                                                     |                                                                                                                                                     ACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTAT  >  NC_002947/1362830‑1363126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.