New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1362978	15 (0.510)	5 (0.180)	5/228	NT	22.3%	intergenic (+15/‑336)	phoQ/dctA‑I	sensor protein/C4‑dicarboxylate transport protein
	?	NC_002947	= 1363010	21 (0.770)					intergenic (+47/‑304)	phoQ/dctA‑I	sensor protein/C4‑dicarboxylate transport protein

GTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACGGACCTTGCACCCTTCAT  >  NC_002947/1362865‑1363157                                                                                                                                                  |                                                                                                                                                    gTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCggca                                                                                                                                                 >  1:381878‑M2/1‑146 (MQ=255)                     cAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTggcacaggctaagaatcaatccag                                                                                                                             >  1:485017‑M2/1‑126 (MQ=255)                         tATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGAtt                                                                                                                         >  1:200813/1‑150 (MQ=255)                          aTGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCggcacag                                                                                                                                              >  2:568612‑M2/1‑121 (MQ=255)                          aTGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCggcacag                                                                                                                                              <  1:568612‑M2/128‑8 (MQ=255)                              cGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATcc                                                                                                                                       <  1:153613/131‑1 (MQ=255)                              cGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATcc                                                                                                                                       >  2:153613/1‑131 (MQ=255)                               gCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGcc                                                                                                                   <  2:200813/150‑1 (MQ=255)                                            ttGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGGTCGCAGGTCAATCTGCGAATGGGCCGGCACAGGCAATCTACAAAGGGCGGATTTCCGCCATTCCTCCTTGtg                                                                                                      >  2:515906/1‑149 (MQ=255)                                                   ttCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTc                                                                                               >  2:636416/1‑150 (MQ=255)                                                         aCTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCAt                                                                                         <  2:495523/150‑1 (MQ=255)                                                                             ggATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATc                                                                     >  1:405062/1‑150 (MQ=255)                                                                                                ttgattCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGccc                                                  >  1:596145/1‑150 (MQ=255)                                                                                                     tCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCGGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCg                                             >  1:303506/1‑150 (MQ=255)                                                                                                         aGCCTGTGCCAGCCCGTTCGCAGGTCAATCTGCCAATGCGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTgg                                         <  2:303506/150‑1 (MQ=255)                                                                                                           ccTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCggcacaggctaagaatcaatccaggtggaaggtgatcctgaacgcagcgccccccagtggcgaatcgccaaggctcagctcggcgtcatag                                                          >  1:195102‑M2/1‑40 (MQ=255)                                                                                                           ccTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCggcacaggctaagaatcaatccaggtggaaggtgatcctgaacgcagcgccccccagtggcgaatcgccaaggctcagctcggcgtcatag                                                          <  2:195102‑M2/131‑92 (MQ=255)                                                                                                           ccTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGc                                       <  2:405062/150‑1 (MQ=255)                                                                                                             tgtgCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCAt                                     <  2:596145/150‑1 (MQ=255)                                                                                                                 ccAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCggcacaggctaagaatcaatccaggtggaaggtgatcctgaacgcagcgccccccagtggcgaatcgccaaggctcagctcggcgtcatagctgtcgacgatatccttgaccactg                                 <  2:397450‑M2/150‑117 (MQ=255)                                                                                                                   aGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGc                                                                          <  2:709010/107‑1 (MQ=255)                                                                                                                   aGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGc                                                                          >  1:709010/1‑107 (MQ=255)                                                                                                                    gCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATccc                              <  1:636416/150‑1 (MQ=255)                                                                                                                              aGGTCAATCCGCGAATGGGCCggcacaggctaagaatcaatccaggtggaaggtgatcctgaacgcagcgccccccagtggcgaatcgccaaggctcagctcggcgtcatagctgtcgacgatatccttgaccactgccaagccgatgcc                    >  1:397450‑M2/1‑21 (MQ=255)                                                                                                                                     tCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACg                   >  2:107723/1‑144 (MQ=255)                                                                                                                                     tCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACg                   <  1:107723/144‑1 (MQ=255)                                                                                                                                       tgcgAACGGGCTGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACGGACCTTGc           >  1:483914/2‑150 (MQ=255)                                                                                                                                       cgcgAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACGGACCTTGc           >  1:274457/1‑150 (MQ=255)                                                                                                                                       cgcgAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACGGACCTTGc           >  1:263460/1‑150 (MQ=255)                                                                                                                                       cgcgAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCACAGCAAATACGGACCTTGc           >  1:135441/1‑150 (MQ=255)                                                                                                                                        gcgAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACGGACCTTGCa          <  2:135441/150‑1 (MQ=255)                                                                                                                                              gggCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCATACCGGGAGTATCGCCCTGTCGTTGGGCTTTTAGCCCCAGCAAATACGGACCTTGCACCCCTc    >  2:329819/1‑150 (MQ=255)                                                                                                                                                gCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACGGACCTTGCACCCTTCAt  >  2:745098/1‑150 (MQ=255)                                                                                                                                                gCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCAAATCCGTCCCGGGTGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACGGACCTTGCACCCTTCAt  <  1:696436/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACGGACCTTGCACCCTTCAT  >  NC_002947/1362865‑1363157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.