| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1392884 = | 26 (0.880) | 4 (0.190) | 6/172 | NT | 19.5% | intergenic (+48/‑138) | PP_1214/ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC |
| ? | NC_002947 | 1392984 = | 15 (0.730) | intergenic (+148/‑38) | PP_1214/ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC | |||||
GCCGGTGATGCGCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1393066‑1392884‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacctgtaggagcgggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGCTG > NC_002947/1392984‑1393119 GCCGGTGATGCGCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACC < 1:404437/150‑1 GCGCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGC < 2:422826/150‑1 gcgatgCGGGGTCGATACCTAGAACCAGATCCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGG < 2:604029/144‑1 GCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGG < 1:560830/150‑1 GCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGG > 2:560830/1‑150 GCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGG < 1:465301/150‑1 GAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGT < 2:770877/150‑1 gGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTT < 2:179687/149‑1 gcGGTCGAAACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAAAGATGCATCTCTACAAACTGCGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAGGTATTACCCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACC < 2:72507/148‑1 GGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCC > 1:677864/1‑150 GGGTCAATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATTATGCATCTCTACAAACTGCGCCGGCCCTTTCGCCGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCCTAATACCTGTAGGAGCGGGTTTACCC < 1:381764/150‑1 ACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGG < 2:520670/150‑1 CTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGG > 1:208596/1‑132 CTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGG < 2:208596/132‑1 TACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTAT > 1:727981/1‑150 CTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTT < 2:106422/97‑1 CTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTT > 1:106422/1‑97 GCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTAACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGC < 1:72507/150‑1 CGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCC < 2:727981/150‑1 cAATACCTGTAAGAGCGGATTTACCCGCGAAAGGGCCGGCTCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAAGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGT < 2:381764/149‑1 AATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTG < 1:422826/150‑1 CTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGC > 1:59475/1‑69 CTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGC < 2:59475/69‑1 CTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGC < 2:114608/106‑1 CTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGC > 1:114608/1‑106 CTGGAGGGGCGGGTTTACCCGCAAAAGGGGCGACGCAGTGTGTAGAGATGCGTCATCGTCTCAACGGGATTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGC > 2:248415/1‑150 CCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGC > 1:798127/1‑150 GCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGCTG > 2:405593/1‑150 GCCGGTGATGCGCGAGCCGGGGTCGATACCTAGAATCAGAGTCATAAAGCCCGTCGAAAAAATGATGCATCTCTACAAACTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1393066‑1392884‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacctgtaggagcgggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGCTG > NC_002947/1392984‑1393119 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |