| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1392884 = | 26 (0.880) | 4 (0.190) | 6/172 | NT | 19.5% | intergenic (+48/‑138) | PP_1214/ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC |
| ? | NC_002947 | 1392984 = | 15 (0.730) | intergenic (+148/‑38) | PP_1214/ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC | |||||
TCAAGCTGATCGACATGCTCGAAGACCTGGACGACGTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCCCATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGA > NC_002947/1392742‑1393031 | tCAAGCTGATCGACATGCTCGAAGACCTGGACGACGTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGccc > 1:341896/1‑150 (MQ=255) cagcccgacgccacgtactcgcaaccacgggcggtctggcgtaccacgccatagccggtgatgcgcgagccggggtcgatacctagaatcagagtcataaagcccgtcgaaaaaatgatgcatctctacaaactgcGCCGGCCCTTTcgc > 2:405593‑M1/137‑150 (MQ=255) gcccgacgccacgtactcgcaaccacgggcggtctggcgtaccacgccatagccggtgatgcgcgagccggggtcgatacctagaatcagagtcataaagcccgtcgaaaaaatgatgcatctctacaaactgcGCCGGCCCTTTCGCgg > 1:798127‑M1/135‑150 (MQ=255) tCGACATGCTCGAAGACCTGGACGACGTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCggg < 2:625609/150‑1 (MQ=255) tCGAAGACCTGGACGACGTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGc < 2:670734/150‑1 (MQ=255) aCCTGGACGACGTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCTACCGGCTAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTAc < 2:393444/150‑1 (MQ=39) gcaaccacgggcggtctggcgtaccacgccatagccggtgatgcgcgagccggggtcgatacctagaatcagagtcataaatcccgttgagacgatgacgcatctctacacactgcGTCGCCCCTTTTGCGGGTAAACCCGCCCCTCCAg > 2:248415‑M1/117‑150 (MQ=255) cacgggcggtctggcgtaccacgccatagccggtgatgcgcgagccggggtcgatacctagaatcagagtcataaagcccgtcgaaaaaatgatgcatctctacaaactgcGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTAtt < 1:422826‑M1/39‑1 (MQ=255) gacgTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTa > 1:652117/1‑150 (MQ=255) acgggcggtctggcgtaccacgccatagccggtgatgcgcgagccggggtcgatacttagaatcagagtcataaagcccgtcgaaaaaatgatgcatctctacaaactgaGCCGGCCCTTTCGCGGGTAAATCCGCTCTTACAGGTattg < 2:381764‑M1/40‑2 (MQ=255) gggcggtctggcgtaccacgccatagccggtgatgcgcgagccggggtcgatacctagaatcagagtcataaagcccgtcgaaaaaatgatgcatctctacaaactgtGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACg < 2:727981‑M1/42‑1 (MQ=255) gTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGc > 1:149332/1‑150 (MQ=255) tCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACa < 2:452396/130‑1 (MQ=255) tCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACa > 1:452396/1‑130 (MQ=255) aTTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAAcc < 2:437376/117‑1 (MQ=255) aTTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAAcc > 1:437376/1‑117 (MQ=255) gccatagccggtgatgcgcgagccggggtcgatacctagaatcagagtcataaagcccgtcgaaaaaatgatgcatctctacaaactgcGCCGGCCCTTTCGCGGGTTAACCCGCTCCTACAGGTATTACGCCCATTTCAAATGTGGTGc < 1:72507‑M1/61‑1 (MQ=255) ccAGATTTCCGACGAGCTCATGTAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGACCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAAGTATTACGCCCATCTCAATTGTGGTGCAGTAc > 2:464071/1‑150 (MQ=39) tttCCGACCAGATCATGGAAAACCTCAGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACTAGTATTACGCCCATTTCAAATGTGGTGCAGTACCTGTa < 1:62967/150‑1 (MQ=255) gacgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCCCATTTCAAATGTGGTGCa > 1:477022/1‑136 (MQ=255) gacgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCCCATTTCAAATGTGGTGCa < 2:477022/136‑1 (MQ=255) gcgagccggggtcgatacctagaatcagagtcataaagcccgtcgaaaaaatgatgcatctctacaaactgtGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAg > 1:114608‑M1/73‑106 (MQ=255) gcgagccggggtcgatacctagaatcagagtcataaagcccgtcgaaaaaatgatgcatctctacaaactgtGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAg < 2:114608‑M1/34‑1 (MQ=255) gagaTCATGGAAAACCTCGGCTAAGGTGATTTGGTATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCCCATTTCAAATGTGGTGCAGTACCTGTAGGAGCggg < 2:498775/150‑1 (MQ=255) gagaTCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCCCATTTCAAATGTGGTGCAGTACCTGTAGGAGCggg < 1:464071/150‑1 (MQ=255) cTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCCCATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAgg > 1:540319/1‑150 (MQ=255) tttGGCATTTTGTGCCATCTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAACCCCGCTCCTACAGGTATTACGCCCATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTg < 2:715024/150‑1 (MQ=255) tttGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCCCATTTCAAATGTGGTGCAGTCCCTGTAGGAGCGGGTTTTCCCGCGAAAGGGCCGGCGCAGTTTg < 1:616273/150‑1 (MQ=255) ataaagcccgtcgaaaaaatgatgcatctctacaaactgtGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCCCATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTa > 1:727981‑M1/41‑150 (MQ=255) gcccgtcgaaaaaatgatgcatctctacaaactgcGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAg > 1:59475‑M1/36‑69 (MQ=255) gcccgtcgaaaaaatgatgcatctctacaaactgcGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAg < 2:59475‑M1/34‑1 (MQ=255) cacctctGAGCGTTCGATAGCGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCTTACAGGTATTACGCCCATTTAAAATGTGGTGCAGTACCTGTATGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCAtt < 2:149332/147‑1 (MQ=37) aaaatgatgcatctctacaaactgcGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCCCATTTCAAATGTGGTGCAGTACCTGTAg < 2:106422‑M1/72‑1 (MQ=255) aaaatgatgcatctctacaaactgcGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCCCATTTCAAATGTGGTGCAGTACCTGTAg > 1:106422‑M1/26‑97 (MQ=255) tctGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCCCATTTCAAAt > 1:544182/1‑77 (MQ=255) tctGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCCCATTTCAAAt < 2:544182/77‑1 (MQ=255) tctGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGATAAACCCGCTCCTACAGGTATTACGCCCATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCAtttttt > 2:334925/1‑150 (MQ=255) ctGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCCCATTTCAAAtgtg < 2:449013/79‑1 (MQ=255) ctGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCCCATTTCAAAtgtg > 1:449013/1‑79 (MQ=255) tGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCCCATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCg > 2:677864/1‑150 (MQ=255) gtgCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCCCATTTCAAATGTGGTGCAGTCCCTGTAGGCGTGGGTTTCCCCGAGAAAGGGTCCACCCAGGGTGTAGACGTGCGTCATTTTTTCGACGGGCTTTATGACTCTGa < 1:217410/150‑1 (MQ=25) | TCAAGCTGATCGACATGCTCGAAGACCTGGACGACGTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCCCATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGA > NC_002947/1392742‑1393031 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |