| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1392884 = | 26 (0.880) | 4 (0.190) | 6/172 | NT | 19.5% | intergenic (+48/‑138) | PP_1214/ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC |
| ? | NC_002947 | 1392984 = | 15 (0.730) | intergenic (+148/‑38) | PP_1214/ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC | |||||
TTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGCTG > NC_002947/1392842‑1393119 | tttGGCATTTTGTGCCATCTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAACCCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTg < 2:715024/150‑1 (MQ=255)tttGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTCCCTGTAGGAGCGGGTTTTCCCGCGAAAGGGCCGGCGCAGTTTg < 1:616273/150‑1 (MQ=255) ataaagcccgtcgaaaaaatgatgcatctctacaaactgtGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTa > 1:727981‑M1/41‑150 (MQ=255) cacctctGAGCGTTCGATAGCGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCTTACAGGTATTACGCC‑CATTTAAAATGTGGTGCAGTACCTGTATGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCAtt < 2:149332/147‑1 (MQ=37) tctGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGATAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCAtttttt > 2:334925/1‑150 (MQ=255) tGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCg > 2:677864/1‑150 (MQ=255) tacaaactgcgccggccctttcgcgggtaaacccgctcctacaggtactgcaccacatttgaaatgggcgtaatacctgtaggagcgggtttacccgcgaaagggccggcACAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTAt > 1:727981‑M2/111‑150 (MQ=255) gtgCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTCCCTGTAGGCGTGGGTTTCCCCGAGAAAGGGTCCACCCAGGGTGTAGACGTGCGTCATTTTTTCGACGGGCTTTATGACTCTGa < 1:217410/150‑1 (MQ=25) CCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGt < 2:520670‑M1/150‑1 (MQ=255) GGGTAAACCCGCTCCTACAGGTATTAGGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCGGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATAATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATTGAccc < 1:381764‑M1/150‑1 (MQ=255) GGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGAccc > 1:677864‑M1/1‑150 (MQ=255) GGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGGGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCGCAGTTTGTAGAGATGCATCTTTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTTTCgaccgc < 2:72507‑M1/150‑3 (MQ=255) AACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGgcc < 2:179687‑M1/150‑2 (MQ=255) ACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTc < 2:770877‑M1/150‑1 (MQ=255) CCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGGATCTGGTTCTAGGTATCgaccccgcatcgc < 2:604029‑M1/150‑7 (MQ=255) CCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAg > 1:208596‑M1/1‑132 (MQ=255) CCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAg < 2:208596‑M1/132‑1 (MQ=255) CCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc < 1:560830‑M1/150‑1 (MQ=255) CCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 2:560830‑M1/1‑150 (MQ=255) CCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc < 1:465301‑M1/150‑1 (MQ=255) GCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCgcgc < 2:422826‑M1/150‑1 (MQ=255) ctacaggtactgcaccacatttgaaatgggcgtaatacctgtaggagcgggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCAtttt > 1:106422‑M2/73‑97 (MQ=255) ctacaggtactgcaccacatttgaaatgggcgtaatacctgtaggagcgggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCAtttt < 2:106422‑M2/25‑1 (MQ=255) GGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGc < 1:404437‑M1/150‑1 (MQ=255) actACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTAt < 2:341896/148‑1 (MQ=255) gcaccacatttgaaatgggcgtaatacctgtaggagcgggttaacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGc < 1:72507‑M2/89‑1 (MQ=255) gCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt < 2:652117/150‑1 (MQ=255) gCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt < 2:465301/150‑1 (MQ=255) cATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGAGAAAGGGCGGGCGCGGTTTGTAGAGATGCAGCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGt > 1:496411/1‑150 (MQ=255) aTTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGGTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCGAGATATCGACGACGCCTCGCGCATCACCGGCTATGGCGTGGTa > 2:104774/1‑150 (MQ=39) tttCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTAc < 2:540319/150‑1 (MQ=255) ttccAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTAc > 1:795835/4‑150 (MQ=255) aaaTGTGGTGCAGTACCGGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCa < 1:287214/150‑1 (MQ=255) aTGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGa < 2:404437/150‑1 (MQ=255) tgCAGTACCTGGAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGATACGCCAGAcccccc > 2:648110/1‑150 (MQ=255) cgtaatacctgtaggagcgggtttacccgcgaaagggccggcACAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGccc < 2:727981‑M2/108‑1 (MQ=255) caatacctgtaagagcggatttacccgcgaaagggccggcTCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAAGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGt < 2:381764‑M2/110‑1 (MQ=255) aatacctgtaggagcgggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTg < 1:422826‑M2/111‑1 (MQ=255) ctgtaggagcgggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGc < 2:59475‑M2/35‑1 (MQ=255) ctgtaggagcgggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGc > 1:59475‑M2/35‑69 (MQ=255) ctgtaggagcgggtttacccgcgaaagggccggcACAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc < 2:114608‑M2/72‑1 (MQ=255) ctgtaggagcgggtttacccgcgaaagggccggcACAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 1:114608‑M2/35‑106 (MQ=255) ctggaggggcgggtttacccgcaaaaggggcgacGCAGTGTGTAGAGATGCGTCATCGTCTCAACGGGATTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGc > 2:248415‑M2/35‑150 (MQ=255) ccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGc > 1:798127‑M2/17‑150 (MQ=255) gcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGCTg > 2:405593‑M2/15‑150 (MQ=255) | TTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGCTG > NC_002947/1392842‑1393119 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |