New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1484825 =	24 (0.810)	3 (0.110)	3/236	NT	10.9%	coding (896/1179 nt)	yhdX	amino acid ABC transporter permease
	?	NC_002947	1484849 =	26 (0.920)					coding (920/1179 nt)	yhdX	amino acid ABC transporter permease

GTACCGGCGAACAGCGAGACCATCTCCGGGTAGCCGATACCGGCCGCCAGCGAAGAGTTCTTCGCCAGGTTCAGGTACTGGCTGGTCAGCGGCGGAATGATCACCCGCAGTGCCTGGGGGATGATCACCTTGCGC‑AGGGTCGGGCCCTCGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1484978‑1484825 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaAGGTGATCATCCCCCAGGCACTGCGGGTGA  >  NC_002947/1484849‑1484878                                                                                                                                                                                           GTACCGGCGAACAGCGAGACCATCTCCGGGTAGCCGATACCGGCCGCCAGCGAAGAGTTCTTCGCCAGGTTCAGGTACTGGCTGGTCAGCGGCGGAATGATCACCCGCAGTGCCTGGGGGATGATCACCTTGCGC‑AGGGTCGGGCCCTCG                                    >  2:792107/1‑150                     CATCTCCGGGTAGCCGATACCGGCCGCCAGCGAAGAGTTCTTCGCCAGGTTCAGGTACTGGCTGGTCAGCGGCGGAATGATCACCCGCAGTGCCTGGGGGATGATCACCTTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCA                <  1:514343/150‑1                                                                                                                                      GC‑AGGGTCGGGCCCTCGCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGA  >  1:59201/1‑51                                                                                                                                      GC‑AGGGTCGGGCCCTCGCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGA  <  2:59201/51‑1                                                                                                                                                                                           GTACCGGCGAACAGCGAGACCATCTCCGGGTAGCCGATACCGGCCGCCAGCGAAGAGTTCTTCGCCAGGTTCAGGTACTGGCTGGTCAGCGGCGGAATGATCACCCGCAGTGCCTGGGGGATGATCACCTTGCGC‑AGGGTCGGGCCCTCGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1484978‑1484825 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaAGGTGATCATCCCCCAGGCACTGCGGGTGA  >  NC_002947/1484849‑1484878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.