New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1484825 =	24 (0.810)	3 (0.110)	3/236	NT	10.9%	coding (896/1179 nt)	yhdX	amino acid ABC transporter permease
	?	NC_002947	1484849 =	26 (0.920)					coding (920/1179 nt)	yhdX	amino acid ABC transporter permease

TTCGTCGGGGGCTGGGTGCTGATCCCCGAGCTGCTGGCGCTGACCCTGGCGCTGACTATCTATACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCTTCGCTGGCGGCCGGTATCGGCTACCCGGAGATGGTCTCGCTGTTCGC  >  NC_002947/1484677‑1484972                                                                                                                                                     |                                                                                                                                                     ttCGTCGGGGGCTGGGTGCTGATCCCCGAGCTGCTGGCGCTGACCCTGGCGCTGACTATCTATACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTg                                                                                                                                                     >  1:332797/1‑150 (MQ=255)           gCTGGGTGCTGATCCCCGAGCTGCTGGCGCTGACCCTGGCGCTGACTATCTATACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGcc                                                                                                                                           <  1:780347/150‑1 (MQ=255)                                  ctgGCGCTGACCCTGGCGCTGACTATCTATACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGctcatc                                                                                                                   <  2:332797/150‑1 (MQ=255)                                    ggCGCTGACCCTGGCGCTGACTATCTATACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATccc                                                                                                                 <  1:684484/150‑1 (MQ=255)                                     gcgcTGACCCTGGCGCTGACTATCTATACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATcccc                                                                                                                >  1:783261/1‑150 (MQ=255)                                       gcTGACCCTGGCGCTGACTATCTATACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGAGCGT‑GCGCGTGGGGATCATCCCCCa                                                                                                              >  2:382622/1‑150 (MQ=255)                                                   gcTGACTATCTATACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGt                                                                                                  <  1:182273/150‑1 (MQ=255)                                                       aCTATCTATACGGTAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATc                                                                                              >  2:138822/1‑150 (MQ=255)                                                         tatctatACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGGGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCAt                                                                                            >  2:668011/1‑150 (MQ=255)                                                         tatctatACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCAt                                                                                            >  1:792107/1‑150 (MQ=255)                                                             tataCGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTccg                                                                                        >  1:91279/1‑150 (MQ=255)                                                                         ttCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGAccagc                                                                            <  2:783261/150‑1 (MQ=255)                                                                                  gAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTAc                                                                      <  1:145030/147‑1 (MQ=255)                                                                                  gAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTAc                                                                      >  2:145030/1‑147 (MQ=255)                                                                                                cGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTAc                                                                      >  1:323483/1‑133 (MQ=255)                                                                                                cGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTAc                                                                      <  2:323483/133‑1 (MQ=255)                                                                                                cGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCgaagaa                                                     >  1:595877/1‑150 (MQ=255)                                                                                                     tCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGACCATCCCCCAGGCACTACGGGTCACGAGTCCCCGGCGGACCAGCCAGTACCTGAACCTGGCGAAGAACTCtt                                                <  1:138822/150‑1 (MQ=255)                                                                                                                  tcaTGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGTGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCtt                                                >  2:689142/1‑137 (MQ=255)                                                                                                                  tcaTGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCtt                                                <  1:689142/137‑1 (MQ=255)                                                                                                                       tcacccgcagtgcctgggggatgatcacctTGCGCGAGGGCCCGACCCT‑gc                                                                                                                                 <  2:59201‑M1/21‑1 (MQ=255)                                                                                                                       tcacccgcagtgcctgggggatgatcacctTGCGCGAGGGCCCGACCCT‑gc                                                                                                                                 >  1:59201‑M1/31‑51 (MQ=255)                                                                                                                       gCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCTTCGCTGGCGGCCGGTATCg                              <  2:457582/150‑1 (MQ=255)                                                                                                                        ccAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCAAGTACCTGAACCTGGCGAAGAACTCTTCGCTGGCGGCCGGTATCgg                             <  1:382622/150‑1 (MQ=255)                                                                                                                                   ccGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGAc                                                                                <  1:551665/88‑1 (MQ=255)                                                                                                                                   ccGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGAc                                                                                >  2:551665/1‑88 (MQ=255)                                                                                                                                     tgggggatgatcacctTGCGC‑AGGGTCGGGCCCTCGCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCTTCGCTGGCGGCCGGTATCGGCTACCCGGAGATg                <  1:514343‑M1/134‑1 (MQ=255)                                                                                                                                           tCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCTTCGCTGGCGGCCGGTATCGGCTACCCGGAGATGGTCTCg          >  2:154619/1‑150 (MQ=255)                                                                                                                                                   ccTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCTTCGCTGGCGGCCGGTATCGGCTACCCGGAGATGGTCTCGCTGTTCGc  >  2:380790/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TTCGTCGGGGGCTGGGTGCTGATCCCCGAGCTGCTGGCGCTGACCCTGGCGCTGACTATCTATACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCTTCGCTGGCGGCCGGTATCGGCTACCCGGAGATGGTCTCGCTGTTCGC  >  NC_002947/1484677‑1484972

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.