New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1484825 =	24 (0.810)	3 (0.110)	3/236	NT	10.9%	coding (896/1179 nt)	yhdX	amino acid ABC transporter permease
	?	NC_002947	1484849 =	26 (0.920)					coding (920/1179 nt)	yhdX	amino acid ABC transporter permease

CTGGCGCTGACCCTGGCGCTGACTATCTATACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCTTCGCTGGCGGCCGGTATCGGCTACCCGGAGATGGTCTCGCTGTTCGCCGGTACCGTGC  >  NC_002947/1484710‑1484983                                                                                                                                             |                                                                                                                                       ctgGCGCTGACCCTGGCGCTGACTATCTATACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGctcatc                                                                                                                              <  2:332797/150‑1 (MQ=255)   ggCGCTGACCCTGGCGCTGACTATCTATACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATccc                                                                                                                            <  1:684484/150‑1 (MQ=255)    gcgcTGACCCTGGCGCTGACTATCTATACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATcccc                                                                                                                           >  1:783261/1‑150 (MQ=255)      gcTGACCCTGGCGCTGACTATCTATACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGAGCGT‑GCGCGTGGGGATCATCCCCCa                                                                                                                         >  2:382622/1‑150 (MQ=255)       catctccgggtagccgataccggccgccagcgaagagttcttcgccaggttcaggtactggctggtcagcggcggaatgatcacccgcagtgcctgggggatgatcaccttgcgcgagggcccgaccctgcgcaAGGTGATCATCCCCCa                                                                                                                         <  1:514343‑M2/16‑1 (MQ=255)                  gcTGACTATCTATACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGt                                                                                                             <  1:182273/150‑1 (MQ=255)                      aCTATCTATACGGTAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATc                                                                                                         >  2:138822/1‑150 (MQ=255)                        tatctatACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGGGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCAt                                                                                                       >  2:668011/1‑150 (MQ=255)                        tatctatACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCAt                                                                                                       >  1:792107/1‑150 (MQ=255)                            tataCGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTccg                                                                                                   >  1:91279/1‑150 (MQ=255)                                        ttCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGAccagc                                                                                       <  2:783261/150‑1 (MQ=255)                                                 gAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTAc                                                                                 <  1:145030/147‑1 (MQ=255)                                                 gAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTAc                                                                                 >  2:145030/1‑147 (MQ=255)                                                               cGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTAc                                                                                 >  1:323483/1‑133 (MQ=255)                                                               cGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTAc                                                                                 <  2:323483/133‑1 (MQ=255)                                                               cGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCgaagaa                                                                >  1:595877/1‑150 (MQ=255)                                                                    tCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGACCATCCCCCAGGCACTACGGGTCACGAGTCCCCGGCGGACCAGCCAGTACCTGAACCTGGCGAAGAACTCtt                                                           <  1:138822/150‑1 (MQ=255)                                                                                 tcaTGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGTGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCtt                                                           >  2:689142/1‑137 (MQ=255)                                                                                 tcaTGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCtt                                                           <  1:689142/137‑1 (MQ=255)                                                                                      gCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCTTCGCTGGCGGCCGGTATCg                                         <  2:457582/150‑1 (MQ=255)                                                                                       ccAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCAAGTACCTGAACCTGGCGAAGAACTCTTCGCTGGCGGCCGGTATCgg                                        <  1:382622/150‑1 (MQ=255)                                                                                                  ccGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGAc                                                                                           >  2:551665/1‑88 (MQ=255)                                                                                                  ccGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGAc                                                                                           <  1:551665/88‑1 (MQ=255)                                                                                                    tgggggatgatcacctTGCGC‑AGGGTCGGGCCCTCGCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCTTCGCTGGCGGCCGGTATCGGCTACCCGGAGATg                           <  1:514343‑M1/134‑1 (MQ=255)                                                                                                          tCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCTTCGCTGGCGGCCGGTATCGGCTACCCGGAGATGGTCTCg                     >  2:154619/1‑150 (MQ=255)                                                                                                                  ccTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCTTCGCTGGCGGCCGGTATCGGCTACCCGGAGATGGTCTCGCTGTTCGc             >  2:380790/1‑150 (MQ=255)                                                                                                                        gcagggtcgggccctcgcgcaAGGTGATCATCCCCCAGGCACTGCGGGTGa                                                                                                           <  2:59201‑M2/30‑1 (MQ=255)                                                                                                                        gcagggtcgggccctcgcgcaAGGTGATCATCCCCCAGGCACTGCGGGTGa                                                                                                           >  1:59201‑M2/22‑51 (MQ=255)                                                                                                                        CGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCTTCGCTGGCGGCCGGTATCGGCTACCCGGAGATGGTCTCGCTGTTCGCCGGTAc       >  2:792107‑M1/1‑150 (MQ=255)                                                                                                                            ggCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCTTCGCTGGCGGCCGGTATCGGCTACCCGGAGATGGTCTCGCTGTTCGCCGGTACCGTg   >  1:523844/1‑150 (MQ=255)                                                                                                                             gCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCTTCGCTGGCGGCCGGTATCGGCTACCCGGAGATGGTCTCGCTGTTCGCCGGTACCGTGc  >  2:397164/1‑150 (MQ=255)                                                                                                                                             |                                                                                                                                       CTGGCGCTGACCCTGGCGCTGACTATCTATACGGCAGCCTTCATCGCCGAAATCGTGCGTTCCGGCATCCGTTCGGTCAGTCATGGCCAGACCGAAGCCGCGCGCTCGTTGGGCCTGCGCGAGGGCCCGACCCT‑GCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCGCTGACCAGCCAGTACCTGAACCTGGCGAAGAACTCTTCGCTGGCGGCCGGTATCGGCTACCCGGAGATGGTCTCGCTGTTCGCCGGTACCGTGC  >  NC_002947/1484710‑1484983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.