| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1577590 = | 31 (1.050) | 3 (0.110) | 3/234 | NT | 8.9% | coding (700/1455 nt) | ttgC | efflux pump outer membrane protein TtgC |
| ? | NC_002947 | 1577635 = | 32 (1.140) | coding (655/1455 nt) | ttgC | efflux pump outer membrane protein TtgC | |||||
CCTGGCAGGCCGACCAGGCCCTGTTCAAGCTGACCGAAGAAACGCTGAAGACCTACGAGGAAAGCTACAACCTCACCCGTCGCAGCAACGAAGTCGGCGTGGCCTCGGCCCTGGACGTCAGCCAGGCGCGTACCGCCGTGGAAGGCGCCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1577742‑1577590‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagggCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAGGGCCTGGTCGGCCTGCCA > NC_002947/1577635‑1577740 CCTGGCAGGCCGACCAGGCCCTGTTCAAGCTGACCGAAGAAACGCTGAAGACCTACGAGGAAAGCTACAACCTCACCCGTCGCAGCAACGAAGTCGGCGTGGCCTCGGCCCTGGACGTCAGCCAGGCGCGTACCGCCGTGGAAGGCGCCA < 1:128467/150‑1CCTGGCAGGCCGACCAGGCCCTGTTCAAGCTGACCGAAGAAACGCTGAAGACCTACGAGGAAAGCTACAACCTCACCCGTCGCAGCAACGAAGTCGGCGTGGCCTCGGCCCTGGACGTCAGCCAGGCGCGTACCGCCGTGGAAGGCGCCA < 1:128705/150‑1 CTGGCGGGCCGACCAGGCCCTGTTCAAGCTGACCGAAGAAACGCTGAAGACCTACGAGGAAAGCTACAACCTCACCCGTCGCAGCAACGAAGTCGGCGTGGCCTCGGCCCTGGACGTCAGCCAGGCGCGTACCGCCGTGGAAGGCGCCAG < 1:134009/150‑1 CCTGGACGTCAGCCAGGCGCGTACCGCCGTGGAAGGCGCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAGGGCCTGGTCGGCCTGCCA > 1:352768/1‑150 CTGGACGTCAGCCAGGCGCGTACCGCCGTGGAAGGCGCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAGG > 1:252816/1‑132 CTGGACGTCAGCCAGGCGCGTACCGCCGTGGAAGGCGCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAGG < 2:252816/132‑1 CCTGGCAGGCCGACCAGGCCCTGTTCAAGCTGACCGAAGAAACGCTGAAGACCTACGAGGAAAGCTACAACCTCACCCGTCGCAGCAACGAAGTCGGCGTGGCCTCGGCCCTGGACGTCAGCCAGGCGCGTACCGCCGTGGAAGGCGCCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1577742‑1577590‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagggCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAGGGCCTGGTCGGCCTGCCA > NC_002947/1577635‑1577740 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |