New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1577590 =	31 (1.050)	3 (0.110)	3/234	NT	8.9%	coding (700/1455 nt)	ttgC	efflux pump outer membrane protein TtgC
	?	NC_002947	1577635 =	32 (1.140)					coding (655/1455 nt)	ttgC	efflux pump outer membrane protein TtgC

CCGATGGCAGGCCGGCCGGTACTTCGGCCAGTTGGTCGGCATCAAGCTCCAGCGGCTTGGCCAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAGG  >  NC_002947/1577443‑1577723                                                                                                                                                     |                                                                                                                                      ccGATGGCAGGCCGGCCGGTACTTCGGCCAGTTGGTCGGCATCAAGCTCCAGCGGCTTGGCCAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGAccc                                                                                                                                     <  1:370231/150‑1 (MQ=255) cagATGGCAGGACGGCCGGTCCGTAGGCCAGTTGGTCGGCATGAAGCTATAGCGGCATGGCAAGGTCGGCCGGAATGGCGGTGCCCAGCAGCACGGTCAGGCTGATGAC‑GTCATGGGCGACGAGGGGCTGGTACTGGGAGTACTTGAccc                                                                                                                                     >  2:38089/3‑150 (MQ=255)  cGATGGCAGGCCGGCCGGTACTTCGGCCAGTTGGTCGGCATCAAGCTCCAGCGGCTTGGCCAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCt                                                                                                                                    >  2:763099/1‑150 (MQ=255)           gccggccgGTACTTCGGCCAGTTGGTCGGCATCAAGCTCCAGCGGCTTGGCCAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTc                                                                                                                           >  1:191525/1‑150 (MQ=255)                 cggTACTTCGGCCAGTTGGTCGGCATCAAGCTCCAGCGGCTTGGCCAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCAcggc                                                                                                                     >  2:342836/1‑150 (MQ=255)                      cTTCGGCCAGTTGGTCGGCATCAAGCTCCAGCGGCTTGGCCAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTAc                                                                                                                >  1:107068/1‑150 (MQ=255)                       ttCGGCCAGTTGGTCGGCATCAAGCTCCAGCGGCTTGGCCAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTAcg                                                                                                               >  1:286007/1‑150 (MQ=255)                        tCGGCCAGTTGGTCGGCATCAAGCTCCAGCGGCTTGGCCAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTAcgc                                                                                                              <  2:665169/150‑1 (MQ=255)                              aGTTGGTCGGCATCAAGCTCCAGCGGCTTGGCCAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTgg                                                                                                        <  1:342836/150‑1 (MQ=255)                               gTTGGTCGGCATCAAGCTCCAGCGGCTTGGCCAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGc                                                                                                       <  2:275721/150‑1 (MQ=255)                                          tCAAGCTCCAGCGGCTTGGCCAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAgg                                                                                            <  2:22092/150‑1 (MQ=255)                                           tggcaggccgaccaggccctgttcaagctgaccgaagaaacgctgaagacctacgaggaaagctacaacctcacccgtcgcagcaacgaagtcggcgtggcctcggCCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAgg                                                                                            >  1:352768‑M1/107‑150 (MQ=255)                                                  cAGCGGCTTGGCCAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGc                                                                                    >  2:6153/1‑150 (MQ=255)                                                        cTTGGCCAGGTCGGCAGGAATGCCGGTGCTCAGCAGCACGGTAAGGC‑GTTATCGGTGCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGcc                                                                              <  2:20806/150‑1 (MQ=255)                                                            cctgttcaagctgaccgaagaaacgctgaagacctacgaggaaagctacaacctcacccgtcgcagcaacgaagtcggcgtggcctcggCCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAg                                                                                             >  1:252816‑M1/90‑132 (MQ=255)                                                            cctgttcaagctgaccgaagaaacgctgaagacctacgaggaaagctacaacctcacccgtcgcagcaacgaagtcggcgtggcctcggCCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAg                                                                                             <  2:252816‑M1/43‑1 (MQ=255)                                                              cAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGCGGCCACGCCGACTTc                                                                        >  2:604559/1‑150 (MQ=255)                                                               aGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGTGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCg                                                                       >  2:29354/1‑150 (MQ=255)                                                               aGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGACTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCg                                                                       >  2:555566/1‑150 (MQ=255)                                                                ggTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGt                                                                      <  1:69095/150‑1 (MQ=255)                                                                 gTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCTTAACGTACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGtt                                                                     <  1:446974/150‑1 (MQ=255)                                                                 gTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGCCGTCCAGGGCCGAGGCCACGCCGACTTCGtt                                                                     <  1:313714/150‑1 (MQ=255)                                                                      cAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTtgctgc                                                                <  2:754479/150‑1 (MQ=255)                                                                        ggAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGa                                                              <  2:286007/150‑1 (MQ=255)                                                                                 gcgCCCCGCAGCACTGTCAGGCTTTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAgg                                                     <  2:443040/148‑1 (MQ=255)                                                                                      cagcagCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTa                                                <  1:6153/150‑1 (MQ=255)                                                                                             aCGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGGTTCGACGGGTGAGGTTGTAGCTTTcc                                         >  1:599052/1‑150 (MQ=255)                                                                                                    ggCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAgg                                  >  1:53729/1‑150 (MQ=255)                                                                                                            aC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTg                                                        >  1:636433/1‑120 (MQ=255)                                                                                                            aC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTg                                                        <  2:636433/120‑1 (MQ=255)                                                                                                                     ggCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTttcttc                  >  2:179787/1‑150 (MQ=255)                                                                                                                      gCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCg                 <  2:107068/150‑1 (MQ=255)                                                                                                                      gCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCg                 <  2:191525/150‑1 (MQ=255)                                                                                                                                     tACTGTGAGTACTTGTCCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGGCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAgg  <  1:38089/150‑1 (MQ=255)                                                                                                                                     tACTGCGAGTACTTGACCCTGGCGACTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAgg  <  2:6562/150‑1 (MQ=255)                                                                                                                                        tGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAgg                                                     >  1:615613/1‑96 (MQ=255)                                                                                                                                        tGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAgg                                                     <  2:615613/96‑1 (MQ=255)                                                                                                                                                 ttGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGa                                                              <  2:483102/78‑1 (MQ=255)                                                                                                                                                 ttGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGa                                                              >  1:483102/1‑78 (MQ=255)                                                                                                                                                 ttGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGttt                      <  2:737088/118‑1 (MQ=255)                                                                                                                                                 ttGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGATGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGttt                      >  1:737088/1‑118 (MQ=255)                                                                                                                                                     |                                                                                                                                      CCGATGGCAGGCCGGCCGGTACTTCGGCCAGTTGGTCGGCATCAAGCTCCAGCGGCTTGGCCAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAGG  >  NC_002947/1577443‑1577723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.