New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1577590 =	31 (1.050)	3 (0.110)	3/234	NT	8.9%	coding (700/1455 nt)	ttgC	efflux pump outer membrane protein TtgC
	?	NC_002947	1577635 =	32 (1.140)					coding (655/1455 nt)	ttgC	efflux pump outer membrane protein TtgC

CAGCGGCTTGGCCAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAGGGCCTGGTCGGCCTGCCAGGTGTAGTAGGCGTTG  >  NC_002947/1577492‑1577756                                                                                                                                                 |                                                                                                                          cAGCGGCTTGGCCAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGc                                                                                                                     >  2:6153/1‑150 (MQ=255)       cTTGGCCAGGTCGGCAGGAATGCCGGTGCTCAGCAGCACGGTAAGGC‑GTTATCGGTGCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGcc                                                                                                               <  2:20806/150‑1 (MQ=255)             cAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGCGGCCACGCCGACTTc                                                                                                         >  2:604559/1‑150 (MQ=255)              aGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGTGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCg                                                                                                        >  2:29354/1‑150 (MQ=255)              aGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGACTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCg                                                                                                        >  2:555566/1‑150 (MQ=255)               ggTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGt                                                                                                       <  1:69095/150‑1 (MQ=255)                gTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCTTAACGTACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGtt                                                                                                      <  1:446974/150‑1 (MQ=255)                gTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGCCGTCCAGGGCCGAGGCCACGCCGACTTCGtt                                                                                                      <  1:313714/150‑1 (MQ=255)                     cAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTtgctgc                                                                                                 <  2:754479/150‑1 (MQ=255)                       ggAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGa                                                                                               <  2:286007/150‑1 (MQ=255)                                gcgCCCCGCAGCACTGTCAGGCTTTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAgg                                                                                      <  2:443040/148‑1 (MQ=255)                                     cagcagCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTa                                                                                 <  1:6153/150‑1 (MQ=255)                                            aCGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGGTTCGACGGGTGAGGTTGTAGCTTTcc                                                                          >  1:599052/1‑150 (MQ=255)                                                   ggCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAgg                                                                   >  1:53729/1‑150 (MQ=255)                                                           aC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTg                                                                                         >  1:636433/1‑120 (MQ=255)                                                           aC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTg                                                                                         <  2:636433/120‑1 (MQ=255)                                                                    ggCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTttcttc                                                   >  2:179787/1‑150 (MQ=255)                                                                     gCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCg                                                  <  2:107068/150‑1 (MQ=255)                                                                     gCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCg                                                  <  2:191525/150‑1 (MQ=255)                                                                                    tACTGTGAGTACTTGTCCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGGCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAgg                                   <  1:38089/150‑1 (MQ=255)                                                                                    tACTGCGAGTACTTGACCCTGGCGACTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAgg                                   <  2:6562/150‑1 (MQ=255)                                                                                       tGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAgg                                                                                      <  2:615613/96‑1 (MQ=255)                                                                                       tGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAgg                                                                                      >  1:615613/1‑96 (MQ=255)                                                                                                ttGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGa                                                                                               >  1:483102/1‑78 (MQ=255)                                                                                                ttGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGa                                                                                               <  2:483102/78‑1 (MQ=255)                                                                                                ttGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGttt                                                       <  2:737088/118‑1 (MQ=255)                                                                                                ttGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGATGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGttt                                                       >  1:737088/1‑118 (MQ=255)                                                                                                     cctggacgtcagccaggcgcgtaccgccgtggaaggcgccagggCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAGGGCCTGGTCGGCCTGCCa                  >  1:352768‑M2/45‑150 (MQ=255)                                                                                                      ctggacgtcagccaggcgcgtaccgccgtggaaggcgccagggCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAgg                                   <  2:252816‑M2/89‑1 (MQ=255)                                                                                                      ctggacgtcagccaggcgcgtaccgccgtggaaggcgccagggCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAgg                                   >  1:252816‑M2/44‑132 (MQ=255)                                                                                                      CTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAGGGCCTGGTCGGCCCGCCAg                 <  1:134009‑M1/150‑1 (MQ=255)                                                                                                       TGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAGGGCCTGGTCGGCCTGCCAgg                <  1:128705‑M1/150‑1 (MQ=255)                                                                                                       TGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAGGGCCTGGTCGGCCTGCCAgg                <  1:128467‑M1/150‑1 (MQ=255)                                                                                                           gcCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAGGGCCTGGTCGGCCTGCCAGGTgta            <  2:128705/150‑1 (MQ=255)                                                                                                           gcCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAGGGCCTGGTCGGCCTGCCAGGTgta            <  2:128467/150‑1 (MQ=255)                                                                                                                     gcggTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAGGGCCTGGTCGGCCTGCCAGGTGTAGTAGGCGTTg  <  1:555566/150‑1 (MQ=255)                                                                                                                              gcCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCa                                                             <  1:708736/82‑1 (MQ=255)                                                                                                                              gcCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCa                                                             >  2:708736/1‑82 (MQ=255)                                                                                                                                                 |                                                                                                                          CAGCGGCTTGGCCAGGTCGGCAGGAATGCCGGTGCCCAGCAGCACGGTCAGGCTGTTGAC‑GTCCTGGGCGACCAGGCGCTGGTACTGCGAGTACTTGACCCTGGCGCCTTCCACGGCGGTACGCGCCTGGCTGACGTCCAGGGCCGAGGCCACGCCGACTTCGTTGCTGCGACGGGTGAGGTTGTAGCTTTCCTCGTAGGTCTTCAGCGTTTCTTCGGTCAGCTTGAACAGGGCCTGGTCGGCCTGCCAGGTGTAGTAGGCGTTG  >  NC_002947/1577492‑1577756

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.