| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1688164 = | 21 (0.710) | 4 (0.140) | 4/234 | NT | 16.3% | coding (382/912 nt) | ydcU | polyamine ABC transporter permease |
| ? | NC_002947 | 1688185 = | 21 (0.750) | coding (361/912 nt) | ydcU | polyamine ABC transporter permease | |||||
CTGCGCACCCTGGGCATGGCGGTGGCAGTGTCGCTGGCCAGCGCGGTACTGGCCTTCCCCATCGCCTATTACATGGCGCGCTACACCAGCGGCAAGACCAAGGCGTTTTTCTACATCGCGGTGATGATGCCGATGTGGGCCAGCTACATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1688314‑1688164‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatcgGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCACCGCCATGCCCAGGGTGCGCAGGATGATGTCGAAGTTC > NC_002947/1688185‑1688330 CTGCGCACCCTGGGCATGGCGGTGGCAGTGTCGCTGGCCAGCGCGGTACTGGCCTTCCCCATCGCCTATTACATGGCGCGCTACACCAGCGGCAAGACCAAGGCGTTTTTCTACATCGCGGTGATGATGCCGATGTGGGCCAGCTACATC < 2:659803/150‑1CTGCGCACCCTGGGCATGGCGGTGGCAGTGTCGCTGGCCAGCACGGTACTGGCCTTCCCCATCGCCTATTACATGGCGCGCTACACCAGCGGCAAGACCAAGGCGTTTTTCTACATCGCGGTGATGATGCCGATGTGGGCCAGCTACATC < 2:164268/150‑1 AGCGCGGTACTGGCCTTCCCCATCGCCTATTACATGGCGCGCTACACCAGCGGCAAGACCAAGGCGTTTTTCTACATCGCGGTGATGATGCCGATGTGGGCCAGCTACAT < 1:321055/110‑1 AGCGCGGTACTGGCCTTCCCCATCGCCTATTACATGGCGCGCTACACCAGCGGCAAGACCAAGGCGTTTTTCTACATCGCGGTGATGATGCCGATGTGGGCCAGCTACAT > 2:321055/1‑110 TGCCGATGTGGGCCAGCTACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAA < 1:161579/86‑1 TGCCGATGTGGGCCAGCTACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAA > 2:161579/1‑86 CCGATGTGGGCCAGCTACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTG > 1:566985/1‑66 CCGATGTGGGCCAGCTACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTG < 2:566985/66‑1 ATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCACCGCCATGCCCAGGGTGCGCAGGATGATGTCGAAGTTC > 1:660450/1‑150 TCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTA < 1:234345/52‑1 TCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTA > 2:234345/1‑52 CTGCGCACCCTGGGCATGGCGGTGGCAGTGTCGCTGGCCAGCGCGGTACTGGCCTTCCCCATCGCCTATTACATGGCGCGCTACACCAGCGGCAAGACCAAGGCGTTTTTCTACATCGCGGTGATGATGCCGATGTGGGCCAGCTACATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1688314‑1688164‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatcgGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCACCGCCATGCCCAGGGTGCGCAGGATGATGTCGAAGTTC > NC_002947/1688185‑1688330 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |