| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1688164 = | 21 (0.710) | 4 (0.140) | 4/234 | NT | 16.3% | coding (382/912 nt) | ydcU | polyamine ABC transporter permease |
| ? | NC_002947 | 1688185 = | 21 (0.750) | coding (361/912 nt) | ydcU | polyamine ABC transporter permease | |||||
CCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCACCGCCATGCCCAGGGTG > NC_002947/1688018‑1688309 | gaacttcgacatcatcctgcgcaccctgggcatggcggtggcagtgtcgctggccagcgcggtactggccttccccatcgcctattacatggcgcgctacaccagcggcaagaccaaggcgtttttctacatcgcggtgatgatgcCGAt > 1:660450‑M1/147‑150 (MQ=255) gTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCcac < 1:594286/150‑1 (MQ=255) cGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGcat > 1:568767/1‑150 (MQ=255) ccTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGc < 2:441100/150‑1 (MQ=255) gcagcaGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGc > 1:690812/1‑150 (MQ=255) cagGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGgt < 2:609751/150‑1 (MQ=255) aaCTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATg < 2:660138/147‑1 (MQ=255) aaCTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATg > 1:660138/1‑147 (MQ=255) aaCTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTaa > 1:23404/1‑150 (MQ=255) tgctgGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCAcc > 1:306670/1‑96 (MQ=255) tgctgGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCAcc < 2:306670/96‑1 (MQ=255) ttacatggcgcgctacaccagcggcaagaccaaggcgtttttctacatcgcggtgatgatgcCGATGTAGCTGGCCCACATCGGca < 1:161579‑M1/24‑1 (MQ=255) ttacatggcgcgctacaccagcggcaagaccaaggcgtttttctacatcgcggtgatgatgcCGATGTAGCTGGCCCACATCGGca > 2:161579‑M1/63‑86 (MQ=255) gACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCg > 1:351440/1‑148 (MQ=255) gACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCg < 2:351440/148‑1 (MQ=255) cACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCAACATCGGCATCATCACCGCGATGTAGAAAAACGGCATGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGaaa > 1:776786/1‑149 (MQ=255) tacaccagcggcaagaccaaggcgtttttctacatcgcggtgatgatgcCGa > 2:234345‑M1/50‑52 (MQ=255) tacaccagcggcaagaccaaggcgtttttctacatcgcggtgatgatgcCGa < 1:234345‑M1/3‑1 (MQ=255) gggCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCa < 1:18705/150‑1 (MQ=255) cagcggcaagaccaaggcgtttttctacatcgcggtgatgatgcCGATGTAGCTGGCCCACATCgg > 1:566985‑M1/45‑66 (MQ=255) cagcggcaagaccaaggcgtttttctacatcgcggtgatgatgcCGATGTAGCTGGCCCACATCgg < 2:566985‑M1/22‑1 (MQ=255) cACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTAc > 2:761445/1‑150 (MQ=255) agGGTCCAGGCATAGGTCTTGACGATGTAGCTGCCCCACATCGGCATCATCACCGCGATGTAGAAAAACGcc < 2:769050/72‑1 (MQ=255) agGGTCCAGGCATAGGTCTTGACGATGTAGCTGCCCCACATCGGCATCATCACCGCGATGTAGAAAAACGcc > 1:769050/1‑72 (MQ=255) aGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCa > 1:798705/1‑144 (MQ=255) aGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCa < 2:798705/144‑1 (MQ=255) gTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCAc > 2:119357/1‑137 (MQ=255) gTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCAc < 1:119357/137‑1 (MQ=255) ttGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCACCGCCATGCCCAGGGTg > 1:677986/1‑150 (MQ=255) ttGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCACCGCCATGCCCAGGGTg > 1:367606/1‑150 (MQ=255) | CCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCACCGCCATGCCCAGGGTG > NC_002947/1688018‑1688309 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |