New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1688164 =	21 (0.710)	4 (0.140)	4/234	NT	16.3%	coding (382/912 nt)	ydcU	polyamine ABC transporter permease
	?	NC_002947	1688185 =	21 (0.750)					coding (361/912 nt)	ydcU	polyamine ABC transporter permease

CGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCACCGCCATGCCCAGGGTGCGCAGGATGATGTCGAAGTTCGACG  >  NC_002947/1688039‑1688334                                                                                                                                                   |                                                                                                                                                      cGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGcat                                                                                                                                                    >  1:568767/1‑150 (MQ=255)                                    ccTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGc                                                                                                                 <  2:441100/150‑1 (MQ=255)                                       gcagcaGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGc                                                                                                              >  1:690812/1‑150 (MQ=255)                                           cagGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGgt                                                                                                          <  2:609751/150‑1 (MQ=255)                                                           aaCTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATg                                                                                             <  2:660138/147‑1 (MQ=255)                                                           aaCTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATg                                                                                             >  1:660138/1‑147 (MQ=255)                                                           aaCTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTaa                                                                                          >  1:23404/1‑150 (MQ=255)                                                              tgctgGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCAcc                                                                                                                                             >  1:306670/1‑96 (MQ=255)                                                              tgctgGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCAcc                                                                                                                                             <  2:306670/96‑1 (MQ=255)                                                                ttacatggcgcgctacaccagcggcaagaccaaggcgtttttctacatcgcggtgatgatgcCGATGTAGCTGGCCCACATCGGca                                                                                                                                                     <  1:161579‑M1/24‑1 (MQ=255)                                                                ttacatggcgcgctacaccagcggcaagaccaaggcgtttttctacatcgcggtgatgatgcCGATGTAGCTGGCCCACATCGGca                                                                                                                                                     >  2:161579‑M1/63‑86 (MQ=255)                                                                   gACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCg                                                                                    <  2:351440/148‑1 (MQ=255)                                                                   gACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCg                                                                                    >  1:351440/1‑148 (MQ=255)                                                                          cACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCAACATCGGCATCATCACCGCGATGTAGAAAAACGGCATGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGaaa                                                                           >  1:776786/1‑149 (MQ=255)                                                                              gggCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCa                                                                       <  1:18705/150‑1 (MQ=255)                                                                                  cagcggcaagaccaaggcgtttttctacatcgcggtgatgatgcCGATGTAGCTGGCCCACATCgg                                                                                                                                                       >  1:566985‑M1/45‑66 (MQ=255)                                                                                  cagcggcaagaccaaggcgtttttctacatcgcggtgatgatgcCGATGTAGCTGGCCCACATCgg                                                                                                                                                       <  2:566985‑M1/22‑1 (MQ=255)                                                                                  cACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTAc                                                                   >  2:761445/1‑150 (MQ=255)                                                                                                        agGGTCCAGGCATAGGTCTTGACGATGTAGCTGCCCCACATCGGCATCATCACCGCGATGTAGAAAAACGcc                                                                                                                           <  2:769050/72‑1 (MQ=255)                                                                                                        agGGTCCAGGCATAGGTCTTGACGATGTAGCTGCCCCACATCGGCATCATCACCGCGATGTAGAAAAACGcc                                                                                                                           >  1:769050/1‑72 (MQ=255)                                                                                                               aGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCa                                            <  2:798705/144‑1 (MQ=255)                                                                                                               aGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCa                                            >  1:798705/1‑144 (MQ=255)                                                                                                                       gTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCAc                                           >  2:119357/1‑137 (MQ=255)                                                                                                                       gTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCAc                                           <  1:119357/137‑1 (MQ=255)                                                                                                                          ttGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCACCGCCATGCCCAGGGTg                           >  1:367606/1‑150 (MQ=255)                                                                                                                          ttGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCACCGCCATGCCCAGGGTg                           >  1:677986/1‑150 (MQ=255)                                                                                                                           tgccgatgtgggccagctacatcgGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTaa                                                                                          >  2:161579‑M2/25‑86 (MQ=255)                                                                                                                           tgccgatgtgggccagctacatcgGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTaa                                                                                          <  1:161579‑M2/62‑1 (MQ=255)                                                                                                                             ccgatgtgggccagctacatcgGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTg                                                                                                            <  2:566985‑M2/44‑1 (MQ=255)                                                                                                                             ccgatgtgggccagctacatcgGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTg                                                                                                            >  1:566985‑M2/23‑66 (MQ=255)                                                                                                                               GATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGTGCTGGCCAGCGACACTGCCACCGCCATGCCCAGGGTGCGCAg                      <  2:164268‑M1/150‑1 (MQ=255)                                                                                                                               GATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCACCGCCATGCCCAGGGTGCGCAg                      <  2:659803‑M1/150‑1 (MQ=255)                                                                                                                                ATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCt                                                             <  1:321055‑M1/110‑1 (MQ=255)                                                                                                                                ATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCt                                                             >  2:321055‑M1/1‑110 (MQ=255)                                                                                                                                           ccACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCACCGCCATGCCCAgg                              <  2:466603/130‑1 (MQ=255)                                                                                                                                           ccACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCACCGCCATGCCCAgg                              >  1:466603/1‑130 (MQ=255)                                                                                                                                               atcgGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCACCGCCATGCCCAGGGTGCGCAGGATGATGTCGAAGTTc      >  1:660450‑M2/5‑150 (MQ=255)                                                                                                                                                tcgGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTa                                                                                                       >  2:234345‑M2/4‑52 (MQ=255)                                                                                                                                                tcgGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTa                                                                                                       <  1:234345‑M2/49‑1 (MQ=255)                                                                                                                                                   gCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGTGCTGGCCAGCGACACTGCCACCGCCATGCCCAGGGTGCGCAGGATGATGTCGAAGTTCGACg  <  1:164268/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                      CGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATCATCACCGCGATGTAGAAAAACGCCTTGGTCTTGCCGCTGGTGTAGCGCGCCATGTAATAGGCGATGGGGAAGGCCAGTACCGCGCTGGCCAGCGACACTGCCACCGCCATGCCCAGGGTGCGCAGGATGATGTCGAAGTTCGACG  >  NC_002947/1688039‑1688334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.