New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1788780 =	20 (0.680)	3 (0.110)	3/234	NT	14.3%	coding (211/756 nt)	uppS	(2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase
	?	NC_002947	1788810 =	17 (0.610)					coding (241/756 nt)	uppS	(2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase

AGAAGAACAGCTCCATCAGCGCACCGACCTCTTCGGCAGGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1788825‑1788780 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctgATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGCGAGGCCGAGGCAGTGACCGCTGGCAACA  >  NC_002947/1788810‑1788957                                                                                                                                                                                                    AGAAGAACAGCTCCATCAGCGCACCGACCTCTTCGGCAGGGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCT                                              >  2:725161/1‑150                TCAGCGCACCGACCTCTTCGGCAGGGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATC                                                                                          >  1:79534/1‑91                TCAGCGCACCGACCTCTTCGGCAGGGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATC                                                                                          <  2:79534/91‑1                                       GGGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGCGAGGCCGAGGCAGTGACCGCTG        <  1:725161/150‑1                                            CTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGCGAGGCCGAGGCAGTGACCGCTGGCAAC   >  2:177708/1‑150                                            CTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGCGAGG                          >  1:270484/1‑127                                            CTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGCGAGG                          <  2:270484/127‑1                                             TGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGCAGAGATCAACATCAGCCTGCGCTTCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGCGAGGCCGAGGCAGTGACCGCTGGCAACA  >  1:337358/1‑150                                                                                                                                                                                                    AGAAGAACAGCTCCATCAGCGCACCGACCTCTTCGGCAGGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1788825‑1788780 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctgATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGCGAGGCCGAGGCAGTGACCGCTGGCAACA  >  NC_002947/1788810‑1788957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.