New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1788780 =	20 (0.680)	3 (0.110)	3/234	NT	14.3%	coding (211/756 nt)	uppS	(2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase
	?	NC_002947	1788810 =	17 (0.610)					coding (241/756 nt)	uppS	(2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase

TGGCAACAACCGCTGGGCGAAAAAACGCCTGCTGCCCGGCGTGGCCGGGCACAAGGCGGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCG  >  NC_002947/1788632‑1788928                                                                                                                                                     |                                                                                                                                                     tgttgccagcggtcactgcctcggcctcgcgcatggcggcctgcagctcaggatggaaacgcgaacggtcgccgatgaagcgcaggctgatgttgatctctgcaaggcgcttggcctcacggcgcagcgccgagaagaacagctccatCa                                                                                                                                                     >  1:337358‑M1/149‑150 (MQ=255)  gttgccagcggtcactgcctcggcctcgcgcatggcggcctgcagctcaggatggaaacgcgaacggtcgccgatgatgcgcaggctgatgttgttctcgtcaaggcgcttggcctcacggcgcagcgccgagaagaacagctccatCAg                                                                                                                                                    >  2:177708‑M1/148‑150 (MQ=255)     aacaacCGCTGGGCGAAAAAACGCCTGCTGCCCGGCGTGGCCGGGCACAAGGCGGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAgcgc                                                                                                                                                 >  1:128201/1‑150 (MQ=255)       cagcggtcactgcctcggcctcgcgcatggcggcctgcagctcaggatggaaacgcgaacggtcgccgatgatgcgcaggctgatgttgttctcgtcaaggcgcttggcctcacggcgcagcgccgagaagaacagctccatCAGCGccc                                                                                                                                               <  1:725161‑M1/8‑1 (MQ=255)           cGCTGGGCGAAAAAACGCCTGCTGCCCGGCGTGGCCGGGCACAAGGCGGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGcc                                                                                                                                           <  1:165576/150‑1 (MQ=255)                    aaaaaaCGCCTGCTGCCCGGCGTGGCCGGGCACAAGGCGGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGTTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTc                                                                                                                                  >  2:78552/1‑150 (MQ=255)                         cctcgcgcatggcggcctgcagctcaggatggaaacgcgaacggtcgccgatgatgcgcaggctgatgttgttctcgtcaaggcgcttggcctcacggcgcagcgccgagaagaacagctccatCAg                                                                                                                                                    >  1:270484‑M1/125‑127 (MQ=255)                         cctcgcgcatggcggcctgcagctcaggatggaaacgcgaacggtcgccgatgatgcgcaggctgatgttgttctcgtcaaggcgcttggcctcacggcgcagcgccgagaagaacagctccatCAg                                                                                                                                                    <  2:270484‑M1/3‑1 (MQ=255)                                ctgcCCGGCGTGGCCGGGCACAAGGCGGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATg                                                                                                                      <  1:211436/150‑1 (MQ=255)                                            gCCGGGCACAAGGCGGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGttcttc                                                                                                          >  2:449318/1‑150 (MQ=255)                                             agctcaggatggaaacgcgaacggtcgccgatgatgcgcaggctgatgttgttctcgtcaaggcgcttggcctcacggcgcagcgccgagaagaacagctccatCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTtcttct                                                                                                         >  2:725161‑M1/105‑150 (MQ=255)                                                    caAGGCGGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCt                                                                                                  <  2:276045/150‑1 (MQ=255)                                                             tgtgGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCCGAGAGAACTGGCAGCGCCCTGCCGAAGAGGTCTGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGa                                                                                         <  1:217238/150‑1 (MQ=255)                                                                                         gatgttgttctcgtcaaggcgcttggcctcacggcgcagcgccgagaagaacagctccatCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGa                                                                                                                        <  2:79534‑M1/31‑1 (MQ=255)                                                                                         gatgttgttctcgtcaaggcgcttggcctcacggcgcagcgccgagaagaacagctccatCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGa                                                                                                                        >  1:79534‑M1/61‑91 (MQ=255)                                                                                         gTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTTGCAGCGCCCTGCCGAAGAGGTCg                                                                                                                                 <  1:308062/82‑1 (MQ=255)                                                                                         gTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCg                                                                                                                                 >  2:308062/1‑82 (MQ=255)                                                                                              tgCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCt                                                        >  2:114860/1‑150 (MQ=255)                                                                                                   aGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAg                                                                                                                   >  2:336636/1‑86 (MQ=255)                                                                                                   aGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAg                                                                                                                   <  1:336636/86‑1 (MQ=255)                                                                                                         gggTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCg                                             <  1:449318/150‑1 (MQ=255)                                                                                                                       aCCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGt                               <  1:78552/150‑1 (MQ=255)                                                                                                                           tGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTcc                           <  1:339907/150‑1 (MQ=255)                                                                                                                             ttCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGttct                                                                                                            <  1:719155/67‑1 (MQ=255)                                                                                                                             ttCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGttct                                                                                                            >  2:719155/1‑67 (MQ=255)                                                                                                                                 ccTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTg                     >  2:219102/1‑150 (MQ=255)                                                                                                                                           cGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGgc           <  1:114860/150‑1 (MQ=255)                                                                                                                                               aaCTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGgccgcc       >  2:371486/1‑150 (MQ=255)                                                                                                                                                    gCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATgcg  >  1:467077/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TGGCAACAACCGCTGGGCGAAAAAACGCCTGCTGCCCGGCGTGGCCGGGCACAAGGCGGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCG  >  NC_002947/1788632‑1788928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.