New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1788780 =	20 (0.680)	3 (0.110)	3/234	NT	14.3%	coding (211/756 nt)	uppS	(2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase
	?	NC_002947	1788810 =	17 (0.610)					coding (241/756 nt)	uppS	(2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase

CTGCCCGGCGTGGCCGGGCACAAGGCGGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGCGAGGCCGAGGCAGTGACCGCTGGCAACA  >  NC_002947/1788663‑1788957                                                                                                                                                    |                                                                                                                                                    ctgcCCGGCGTGGCCGGGCACAAGGCGGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATg                                                                                                                                                   <  1:211436/150‑1 (MQ=255)             gCCGGGCACAAGGCGGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGttcttc                                                                                                                                       >  2:449318/1‑150 (MQ=255)              agctcaggatggaaacgcgaacggtcgccgatgatgcgcaggctgatgttgttctcgtcaaggcgcttggcctcacggcgcagcgccgagaagaacagctccatCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTtcttct                                                                                                                                      >  2:725161‑M1/105‑150 (MQ=255)                     caAGGCGGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCt                                                                                                                               <  2:276045/150‑1 (MQ=255)                              tgtgGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCCGAGAGAACTGGCAGCGCCCTGCCGAAGAGGTCTGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGa                                                                                                                      <  1:217238/150‑1 (MQ=255)                                                          gatgttgttctcgtcaaggcgcttggcctcacggcgcagcgccgagaagaacagctccatCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGa                                                                                                                                                     <  2:79534‑M1/31‑1 (MQ=255)                                                          gatgttgttctcgtcaaggcgcttggcctcacggcgcagcgccgagaagaacagctccatCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGa                                                                                                                                                     >  1:79534‑M1/61‑91 (MQ=255)                                                               tgCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCt                                                                                     >  2:114860/1‑150 (MQ=255)                                                                    aGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAg                                                                                                                                                <  1:336636/86‑1 (MQ=255)                                                                    aGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAg                                                                                                                                                >  2:336636/1‑86 (MQ=255)                                                                          gggTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCg                                                                          <  1:449318/150‑1 (MQ=255)                                                                                        aCCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGt                                                            <  1:78552/150‑1 (MQ=255)                                                                                            tGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTcc                                                        <  1:339907/150‑1 (MQ=255)                                                                                              ttCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGttct                                                                                                                                         <  1:719155/67‑1 (MQ=255)                                                                                              ttCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGttct                                                                                                                                         >  2:719155/1‑67 (MQ=255)                                                                                                  ccTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTg                                                  >  2:219102/1‑150 (MQ=255)                                                                                                      agaagaacagctccatcagcgcaccgacctcttcggcagggcgctgATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCt                                              >  2:725161‑M2/47‑150 (MQ=255)                                                                                                            cGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGgc                                        <  1:114860/150‑1 (MQ=255)                                                                                                                aaCTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGgccgcc                                    >  2:371486/1‑150 (MQ=255)                                                                                                                     tcagcgcaccgacctcttcggcagggcgctgATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATc                                                                                          <  2:79534‑M2/60‑1 (MQ=255)                                                                                                                     tcagcgcaccgacctcttcggcagggcgctgATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATc                                                                                          >  1:79534‑M2/32‑91 (MQ=255)                                                                                                                     gCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATgcg                               >  1:467077/1‑150 (MQ=255)                                                                                                                            ccTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGcgaggcc                        >  2:413491/1‑150 (MQ=255)                                                                                                                                       ggTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATACTTCGCTAGCCTGCTGGAATCCATCCGGACCTTCAGGCCGCCATGCGCGAGGCCGAGGCAGTGAc             <  1:413491/150‑1 (MQ=255)                                                                                                                                          cGGTGCGCTTATGGAGCTGTTCTTCTCGTCGCTGCGCCGGGAGGCCAAGCGCCTTGACAAGAACAACATCAGCCTGCGCATCATCGGCGACCTTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGCGAGGCCGAGGCAGTGACCGc          <  2:128201/150‑1 (MQ=255)                                                                                                                                           ggTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGCGAGGCCGAGGCAGTGACCGCt         <  1:219102/150‑1 (MQ=255)                                                                                                                                            gggcgctgATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGCGAGGCCGAGGCAGTGACCGCTg        <  1:725161‑M2/142‑1 (MQ=255)                                                                                                                                            gTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGcgaggccga                      <  2:417346/136‑1 (MQ=255)                                                                                                                                            gTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGcgaggccga                      >  1:417346/1‑136 (MQ=255)                                                                                                                                            gTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGCGAGGCCGAGGCAGTGACCGCTg        >  1:732824/1‑150 (MQ=255)                                                                                                                                                 ctgATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGcgagg                          <  2:270484‑M2/124‑1 (MQ=255)                                                                                                                                                 ctgATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGcgagg                          >  1:270484‑M2/4‑127 (MQ=255)                                                                                                                                                 ctgATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGCGAGGCCGAGGCAGTGACCGCTGGcaac   >  2:177708‑M2/4‑150 (MQ=255)                                                                                                                                                  tgATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGCAGAGATCAACATCAGCCTGCGCTTCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGCGAGGCCGAGGCAGTGACCGCTGGcaaca  >  1:337358‑M2/3‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CTGCCCGGCGTGGCCGGGCACAAGGCGGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCCGTGAGGCCAAGCGCCTTGACGAGAACAACATCAGCCTGCGCATCATCGGCGACCGTTCGCGTTTCCATCCTGAGCTGCAGGCCGCCATGCGCGAGGCCGAGGCAGTGACCGCTGGCAACA  >  NC_002947/1788663‑1788957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.