| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1833166 = | 35 (1.180) | 5 (0.170) | 5/244 | NT | 11.4% | coding (901/927 nt) | PP_1637 | LysR family transcriptional regulator |
| ? | NC_002947 | 1833195 = | 43 (1.470) | coding (872/927 nt) | PP_1637 | LysR family transcriptional regulator | |||||
CACAAACAGAAGTACCAGACCTCGGCCATGCGTGAGTTTCTCGAGCTATGCCGCAACTTCACTGCGGGCTTTA‑CCCGCAGTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1833250‑1833166‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCCACAGGTACCAGGCTGCCACGGCGGA > NC_002947/1833195‑1833321 CACAAACAGAAGTACCAGACCTCGGCCATGCGTGAGTTTCTCGAGCTATGCCGCAACGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCAT < 1:209309/94‑1CACAAACAGAAGTACCAGACCTCGGCCATGCGTGAGTTTCTCGAGCTATGCCGCAACGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCAT > 2:209309/1‑94 GCAACTTCACTGCGGGCTTTA‑CCCGCAGTGACGTTGCGGCATAGCTCGAGAAACTCACGCATGG > 1:393343/1‑64 GCAACTTCACTGCGGGCTTTA‑CCCGCAGTGACGTTGCGGCATAGCTCGAGAAACTCACGCATGG < 2:393343/64‑1 TGCGGGCTTTA‑CCCGCAGTGAAGTTGCGGCATAGCTCATGCGATTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCCACAGGTACCAGGCTGCCACGGCGGA < 1:7937/150‑1 CACAAACAGAAGTACCAGACCTCGGCCATGCGTGAGTTTCTCGAGCTATGCCGCAACTTCACTGCGGGCTTTA‑CCCGCAGTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1833250‑1833166‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCCACAGGTACCAGGCTGCCACGGCGGA > NC_002947/1833195‑1833321 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |