New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1833166 =	35 (1.180)	5 (0.170)	5/244	NT	11.4%	coding (901/927 nt)	PP_1637	LysR family transcriptional regulator
	?	NC_002947	1833195 =	43 (1.470)					coding (872/927 nt)	PP_1637	LysR family transcriptional regulator

GGCGGCCATCGATCGCATTTCGCTCGAGCGCCACCCGCTGTCGAAAAATGCCAAGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCCACAGGTACCAGGCT  >  NC_002947/1833017‑1833310                                                                                                                                                      |                                                                                                                                                  ggcggcCATCGATCGCATTTCGCTCGAGCGCCACCCGCTGTCGAAAAATGCCAAGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGAtctc                                                                                                                                                   <  2:775128/150‑1 (MQ=255) ggcggcCATCGATCGCATTTCGCTCGAGCGCCACCCGCTGTCGAAAAATGCCAAGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGAtctc                                                                                                                                                   <  2:515132/150‑1 (MQ=255)    ggcCATCGATCGCATTTCGCTCGAGCGCCACCCGCTGTCGAAAAATGCCAAGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTc                                                                                                                                                <  1:203866/150‑1 (MQ=255)                       tccgccgtggcagcctggtacctgtggaaacaccggagctggacctgctgcgccagttctacttcatctggcacaaacagaagtaccagacctcggccatgcgtgaatcgcatgagctatgccgcaaCTTCACTGCGGG‑TAAAGCCCGCa                                                                                                                            <  1:7937‑M1/23‑1 (MQ=255)                                cACCCGCTGTCGAAAAATGCCAAGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTg                                                                                                                   >  2:624146/1‑150 (MQ=255)                                 aCCCGCTGTCGAAAAATGCCAAGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGc                                                                                                                  <  1:697372/150‑1 (MQ=255)                                           gAAAAATGCCAAGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTc                                                                                                        <  2:732170/150‑1 (MQ=255)                                              atgtggcAAGGGCAGGGGCAGCGGGGGACAGCTGGTGGCCCTGACCAGGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCGGCAGTGAAGTTGCGGCATAGCTCgag                                                                                                     <  2:356690/144‑1 (MQ=255)                                                     aaGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCa                                                                                              >  2:205280/1‑150 (MQ=255)                                                      aGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCAc                                                                                             >  1:777021/1‑150 (MQ=255)                                                      aGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCAc                                                                                             <  2:777021/150‑1 (MQ=255)                                                             gggCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGc                                                                                      >  2:412984/1‑150 (MQ=255)                                                             gggCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGc                                                                                      >  1:454822/1‑150 (MQ=255)                                                                cAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGa                                                                                   <  2:37432/150‑1 (MQ=255)                                                                     ccgcACAGCGTGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCt                                                                              <  1:34062/150‑1 (MQ=255)                                                                      cgcACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGc                                                                                                                                           <  1:458105/89‑1 (MQ=255)                                                                      cgcACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGc                                                                                                                                           >  2:458105/1‑89 (MQ=255)                                                                       gcACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAACGCACGTAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGTCTGAgtttttt                                                                            <  2:427936/150‑7 (MQ=255)                                                                                  ggCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGttt                                                                 <  1:500669/150‑1 (MQ=255)                                                                                         aCCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGATGTCTGGTACTTCTGTTTGTGCCAg                                                          >  2:367493/1‑150 (MQ=255)                                                                                           cATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTc                                                                      <  2:198007/136‑1 (MQ=255)                                                                                           cATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTc                                                                      >  1:198007/1‑136 (MQ=255)                                                                                                    gcTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGCCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGCAGTAGaa                                               <  1:321932/150‑1 (MQ=255)                                                                                                        gtgtGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGATGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTgg                                           <  1:367493/150‑1 (MQ=255)                                                                                                        gtgtGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCa                                                           <  2:467599/134‑1 (MQ=255)                                                                                                        gtgtGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCa                                                           >  1:467599/1‑134 (MQ=255)                                                                                                             gggTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGACACTCACGCATGGCCGAGGTCTGGTACTACTGTTTGGGCGAGATGAAGTAGAACTGGCgcag                                      >  2:100486/1‑150 (MQ=255)                                                                                                              ggTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCgcagc                                     >  2:615037/1‑150 (MQ=255)                                                                                                               gtgtGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAg                                                 <  1:190151/137‑1 (MQ=255)                                                                                                               gtgtGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAg                                                 >  2:190151/1‑137 (MQ=255)                                                                                                                tgtgATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGcagcag                                   <  2:18085/150‑1 (MQ=255)                                                                                                                  tgATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGt                                 >  1:260304/1‑150 (MQ=255)                                                                                                                     tCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCa                              >  2:552395/1‑150 (MQ=255)                                                                                                                      ccTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAg                             <  2:454822/150‑1 (MQ=255)                                                                                                                       ccatgcgtgagtttctcgagctatgccgcaaCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGc                                                                                                                  <  2:393343‑M1/33‑1 (MQ=255)                                                                                                                       ccatgcgtgagtttctcgagctatgccgcaaCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGc                                                                                                                  >  1:393343‑M1/32‑64 (MQ=255)                                                                                                                                  gATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTc                 <  1:615037/150‑1 (MQ=255)                                                                                                                                  gATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTc                 >  1:173639/1‑150 (MQ=255)                                                                                                                                  gATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCACTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTc                 >  2:579303/1‑150 (MQ=255)                                                                                                                                     cggcggCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCcac              <  1:205280/150‑1 (MQ=255)                                                                                                                                             atgccgcaaCTTCACTGCGGGCTTTA‑CCCGCAGTGACGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTtgtg                                                              >  2:209309‑M1/10‑94 (MQ=255)                                                                                                                                             atgccgcaaCTTCACTGCGGGCTTTA‑CCCGCAGTGACGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTtgtg                                                              <  1:209309‑M1/85‑1 (MQ=255)                                                                                                                                              caCGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCCACAGGTACCAg     <  1:552395/150‑1 (MQ=255)                                                                                                                                                 gATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCCACAGGTACCAGGCt  >  1:9441/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                  GGCGGCCATCGATCGCATTTCGCTCGAGCGCCACCCGCTGTCGAAAAATGCCAAGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCCACAGGTACCAGGCT  >  NC_002947/1833017‑1833310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.