New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1833166 =	35 (1.180)	5 (0.170)	5/244	NT	11.4%	coding (901/927 nt)	PP_1637	LysR family transcriptional regulator
	?	NC_002947	1833195 =	43 (1.470)					coding (872/927 nt)	PP_1637	LysR family transcriptional regulator

CACCCGCTGTCGAAAAATGCCAAGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCCACAGGTACCAGGCTGCCACGGCGGAAGGCGTCACGCA  >  NC_002947/1833048‑1833333                                                                                                                                                     |                                                                                                                                           cACCCGCTGTCGAAAAATGCCAAGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTg                                                                                                                                          >  2:624146/1‑150 (MQ=255)  aCCCGCTGTCGAAAAATGCCAAGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGc                                                                                                                                         <  1:697372/150‑1 (MQ=255)            gAAAAATGCCAAGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTc                                                                                                                               <  2:732170/150‑1 (MQ=255)               atgtggcAAGGGCAGGGGCAGCGGGGGACAGCTGGTGGCCCTGACCAGGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCGGCAGTGAAGTTGCGGCATAGCTCgag                                                                                                                            <  2:356690/144‑1 (MQ=255)                      aaGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCa                                                                                                                     >  2:205280/1‑150 (MQ=255)                       aGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCAc                                                                                                                    <  2:777021/150‑1 (MQ=255)                       aGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCAc                                                                                                                    >  1:777021/1‑150 (MQ=255)                              gggCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGc                                                                                                             >  2:412984/1‑150 (MQ=255)                              gggCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGc                                                                                                             >  1:454822/1‑150 (MQ=255)                                 cAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGa                                                                                                          <  2:37432/150‑1 (MQ=255)                                      ccgcACAGCGTGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCt                                                                                                     <  1:34062/150‑1 (MQ=255)                                        gcACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAACGCACGTAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGTCTGAgtttttt                                                                                                   <  2:427936/150‑7 (MQ=255)                                                   ggCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGttt                                                                                        <  1:500669/150‑1 (MQ=255)                                                          aCCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGATGTCTGGTACTTCTGTTTGTGCCAg                                                                                 >  2:367493/1‑150 (MQ=255)                                                            cATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTc                                                                                             <  2:198007/136‑1 (MQ=255)                                                            cATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTc                                                                                             >  1:198007/1‑136 (MQ=255)                                                                cacaaacagaagtaccagacctcggccatgcgtgagtttctcgagctatgccgcaacgtcactgcgggtaaagcccgcagtgaagTTGCGGCAt                                                                                                                                    <  1:209309‑M2/9‑1 (MQ=255)                                                                cacaaacagaagtaccagacctcggccatgcgtgagtttctcgagctatgccgcaacgtcactgcgggtaaagcccgcagtgaagTTGCGGCAt                                                                                                                                    >  2:209309‑M2/86‑94 (MQ=255)                                                                     gcTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGCCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGCAGTAGaa                                                                      <  1:321932/150‑1 (MQ=255)                                                                         gtgtGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGATGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTgg                                                                  <  1:367493/150‑1 (MQ=255)                                                                         gtgtGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCa                                                                                  <  2:467599/134‑1 (MQ=255)                                                                         gtgtGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCa                                                                                  >  1:467599/1‑134 (MQ=255)                                                                              gggTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGACACTCACGCATGGCCGAGGTCTGGTACTACTGTTTGGGCGAGATGAAGTAGAACTGGCgcag                                                             >  2:100486/1‑150 (MQ=255)                                                                               ggTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCgcagc                                                            >  2:615037/1‑150 (MQ=255)                                                                                gtgtGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAg                                                                        <  1:190151/137‑1 (MQ=255)                                                                                gtgtGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAg                                                                        >  2:190151/1‑137 (MQ=255)                                                                                 tgtgATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGcagcag                                                          <  2:18085/150‑1 (MQ=255)                                                                                   tgATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGt                                                        >  1:260304/1‑150 (MQ=255)                                                                                      tCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCa                                                     >  2:552395/1‑150 (MQ=255)                                                                                       ccTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAg                                                    <  2:454822/150‑1 (MQ=255)                                                                                        ccatgcgtgagtttctcgagctatgccgcaaCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGc                                                                                                                                         >  1:393343‑M1/32‑64 (MQ=255)                                                                                        ccatgcgtgagtttctcgagctatgccgcaaCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGc                                                                                                                                         <  2:393343‑M1/33‑1 (MQ=255)                                                                                                   gATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTc                                        <  1:615037/150‑1 (MQ=255)                                                                                                   gATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTc                                        >  1:173639/1‑150 (MQ=255)                                                                                                   gATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCACTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTc                                        >  2:579303/1‑150 (MQ=255)                                                                                                      cggcggCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCcac                                     <  1:205280/150‑1 (MQ=255)                                                                                                              atgccgcaaCTTCACTGCGGGCTTTA‑CCCGCAGTGACGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTtgtg                                                                                     >  2:209309‑M1/10‑94 (MQ=255)                                                                                                              atgccgcaaCTTCACTGCGGGCTTTA‑CCCGCAGTGACGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTtgtg                                                                                     <  1:209309‑M1/85‑1 (MQ=255)                                                                                                               caCGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCCACAGGTACCAg                            <  1:552395/150‑1 (MQ=255)                                                                                                                  gATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCCACAGGTACCAGGCt                         >  1:9441/1‑150 (MQ=255)                                                                                                                    gcaacttcactgcgggctttacccgcagtgacgTTGCGGCATAGCTCGAGAAACTCACGCATgg                                                                                                              <  2:393343‑M2/31‑1 (MQ=255)                                                                                                                    gcaacttcactgcgggctttacccgcagtgacgTTGCGGCATAGCTCGAGAAACTCACGCATgg                                                                                                              >  1:393343‑M2/34‑64 (MQ=255)                                                                                                                        gTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACCCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCCACAGGTACCAGGCTGCCAcg                   >  2:315886/1‑150 (MQ=255)                                                                                                                          cACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCTAGGTGTCGGATATCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCCACAGGTACCAGGCTGCCAcggc                 <  1:412984/150‑1 (MQ=255)                                                                                                                           aCTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACCCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCCACAGGTACCAGGCTGCCAcggcg                <  1:315886/150‑1 (MQ=255)                                                                                                                              tgcgggctttacccgcagtgaagTTGCGGCATAGCTCATGCGATTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCCACAGGTACCAGGCTGCCACGGCGGa              <  1:7937‑M2/127‑1 (MQ=255)                                                                                                                                ggg‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTgg                                                                  <  2:103396/95‑1 (MQ=255)                                                                                                                                ggg‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTgg                                                                  >  1:103396/1‑95 (MQ=255)                                                                                                                                ggg‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCCACAGGTACCAGGCTGCCACGGCGGAAgg           >  1:281068/1‑150 (MQ=255)                                                                                                                                 gg‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAg                                                    <  1:318077/108‑1 (MQ=255)                                                                                                                                 gg‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAg                                                    >  2:318077/1‑108 (MQ=255)                                                                                                                                         cccGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTa                                                                         <  2:403788/80‑1 (MQ=255)                                                                                                                                         cccGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTa                                                                         >  1:403788/1‑80 (MQ=255)                                                                                                                                          ccGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCCACAGGTACCAGGCTGCCACGGCGGAAGGCGTCACGCa  >  2:702928/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                           CACCCGCTGTCGAAAAATGCCAAGGACATGGGCAGCGCCGCACAGCTGGTGGCCCTGACCATGGTGGCGCTGGTGTGGGGTGTGATCCTGCTTTAAGCGATCGGCGGCAGCACGATCTCGTCACTGCGGG‑TAAAGCCCGCAGTGAAGTTGCGGCATAGCTCGAGAAACTCACGCATGGCCGAGGTCTGGTACTTCTGTTTGTGCCAGATGAAGTAGAACTGGCGCAGCAGGTCCAGCTCCGGTGTTTCCACAGGTACCAGGCTGCCACGGCGGAAGGCGTCACGCA  >  NC_002947/1833048‑1833333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.