| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1928935 = | 42 (1.420) | 4 (0.140) | 4/234 | NT | 9.6% | coding (1199/2154 nt) | PP_1728 | membrane protein |
| ? | NC_002947 | 1928987 = | 35 (1.250) | coding (1147/2154 nt) | PP_1728 | membrane protein | |||||
CATGGTGCTCAACGGCCTGGTGCGACGCCATGCCGCCAACCCCAAGCGGGCCAGCAAGCGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1929000‑1928935‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGGTGTCGCCGGCGGAGACGAAGGTGGCGAACAGCGAAATGGCCACCAGAATCAGCGCCGGAATGAACCAGAAGCTGCCGA > NC_002947/1928987‑1929130 CATGGTGCTCAACGGCCTGGTGCGACGCCATGCCGCCAACCCCAAGCGGGCCAGCAAGCGCCAG < 1:119440/64‑1CATGGTGCTCAACGGCCTGGTGCGACGCCATGCCGCCAACCCCAAGCGGGCCAGCAAGCGCCAG > 2:119440/1‑64 GCCTGGTGCGACGCCATGCCGCCAACCCCAAGCGGGCCAGCAAGCGCCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGAC > 1:263663/1‑99 GCCTGGTGCGACGCCATGCCGCCAACCCCAAGCGGGCCAGCAAGCGCCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGAC < 2:263663/99‑1 GTGCGACGCCATGCCGCCAACCCCAAGCGGGCCAGCAAGCGCCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGGTGTC > 1:38798/1‑117 GTGCGACGCCATGCCGCCAACCCCAAGCGGGCCAGCAAGCGCCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGGTGTC < 2:38798/117‑1 CCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGGTGTCGCCGGCGGAGACGAAGGTGGCGAACAGCGAAATGGCCACCAGAATCAGCGCCGGAATGAACCAGAAGCTGCCGA < 1:455230/150‑1 CATGGTGCTCAACGGCCTGGTGCGACGCCATGCCGCCAACCCCAAGCGGGCCAGCAAGCGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1929000‑1928935‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGGTGTCGCCGGCGGAGACGAAGGTGGCGAACAGCGAAATGGCCACCAGAATCAGCGCCGGAATGAACCAGAAGCTGCCGA > NC_002947/1928987‑1929130 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |