New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1928935 =	42 (1.420)	4 (0.140)	4/234	NT	9.6%	coding (1199/2154 nt)	PP_1728	membrane protein
	?	NC_002947	1928987 =	35 (1.250)					coding (1147/2154 nt)	PP_1728	membrane protein

GCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGGTGTCGCCGGCGGAGACGAAGGTGGCGAACAGCGAAATGGCCACCAGAATCAGCGCCGGAATGAACCAGAAGCTGCCGA  >  NC_002947/1928841‑1929130                                                                                                                                                   |                                                                                                                                                gCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGtt                                                                                                                                              >  2:455230/1‑150 (MQ=255)        acGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCAcc                                                                                                                                       <  2:573988/150‑1 (MQ=255)                gCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCacac                                                                                                                               <  2:395299/150‑1 (MQ=255)                           tGAACACCAGCCAGATGAACAGGTGCACCCGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCAACAGGCCGTTGAGCACCATGCACACCACCACCAGcc                                                                                                                    >  2:363386/1‑149 (MQ=255)                               cacCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGt                                                                                                                <  1:510356/150‑1 (MQ=255)                                  cagccagATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGca                                                                                                             <  2:421883/150‑1 (MQ=255)                                    gccagATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCCGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTAcaaa                                                                                                           >  1:83673/1‑148 (MQ=255)                                     ccagATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACAt                                                                                                          >  1:629813/1‑150 (MQ=255)                                        gATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAg                                                                                                       >  1:291074/1‑150 (MQ=255)                                            aaCAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGAc                                                                                                   <  1:273307/150‑1 (MQ=255)                                                 gTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGca                                                                                                                                  <  2:727828/114‑1 (MQ=255)                                                 gTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGca                                                                                                                                  >  1:727828/1‑114 (MQ=255)                                                      ccAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAggg                                                                                         >  2:586769/1‑150 (MQ=255)                                                       cagcagGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGc                                                                                        >  1:434693/1‑150 (MQ=255)                                                        agcagGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCg                                                                                       >  1:472914/1‑150 (MQ=255)                                                             gTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCa                                                                                                        <  2:635344/128‑1 (MQ=255)                                                             gTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCa                                                                                                        >  1:635344/1‑128 (MQ=255)                                                             gTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCt                                                                                  <  2:377022/150‑1 (MQ=255)                                                              tAGCCGCAGTTGCGCAGGCGTTCGGCCTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTg                                                                                 >  2:8776/1‑150 (MQ=255)                                                                gCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCAt                                                                                                                                     >  2:120932/1‑96 (MQ=255)                                                                gCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCAt                                                                                                                                     <  1:120932/96‑1 (MQ=255)                                                                 ccGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGgtg                                                                              <  1:84071/150‑1 (MQ=255)                                                                      gTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGt                                                                                                                >  2:414689/1‑111 (MQ=255)                                                                      gTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGt                                                                                                                <  1:414689/111‑1 (MQ=255)                                                                        tGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACTGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGGTGTCGCcgg                                                                       <  2:291074/150‑1 (MQ=255)                                                                               gCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGc                                                                                                                                          >  1:533459/1‑76 (MQ=255)                                                                               gCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGc                                                                                                                                          <  2:533459/76‑1 (MQ=255)                                                                                   tCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGGTGTCGCCGGCGGAGACGAAg                                                            >  1:755395/1‑150 (MQ=255)                                                                                     ggTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGGTGTCGCCGGCGGAGACGAAGGt                                                          <  2:629813/150‑1 (MQ=255)                                                                                               gcctggtgcgacgccatgccgccaaccccaagcgggccagcaagcgccaggcCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGAc                                                                                                   <  2:263663‑M2/47‑1 (MQ=255)                                                                                               gcctggtgcgacgccatgccgccaaccccaagcgggccagcaagcgccaggcCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGAc                                                                                                   >  1:263663‑M2/53‑99 (MQ=255)                                                                                                 CTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATg                                                                                                                                    >  2:119440‑M1/1‑64 (MQ=255)                                                                                                 CTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATg                                                                                                                                    <  1:119440‑M1/64‑1 (MQ=255)                                                                                                    gtgcgacgccatgccgccaaccccaagcgggccagcaagcgccaggcCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGGTGTc                                                                            >  1:38798‑M2/48‑117 (MQ=255)                                                                                                    gtgcgacgccatgccgccaaccccaagcgggccagcaagcgccaggcCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGGTGTc                                                                            <  2:38798‑M2/70‑1 (MQ=255)                                                                                                               cccGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACACCACCCACGTCGGCCGGGCGGTGCGGGTGGCGCAGGCGGAGAAGAAGCTGTCGTAAAGCGAAGTGGCCACCAGaa                                >  1:613119/1‑150 (MQ=255)                                                                                                                ccGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCacac                                                                                                                               <  2:709120/54‑1 (MQ=255)                                                                                                                ccGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCacac                                                                                                                               >  1:709120/1‑54 (MQ=255)                                                                                                                           tGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGGTGTCGCCGGCGGAGACGAAGGTGGCGAACAGCGAAATGGCCACCAGAATCAGCGCCGGaa                    <  1:441130/150‑1 (MQ=255)                                                                                                                            ggcggcATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGGTGTCGCCGGCGGAGACGAAGGTGGCGAACAGCGAAATGGCCACCAGAATCAGCGCCGGAAt                   <  2:472914/150‑1 (MQ=255)                                                                                                                                gcATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGGTGTCGCCGGCGGAGACGAAGGTGGCGAACAGCGAAATGGCCACCAGAATCAGCGCCGGAATGAAc               <  2:755395/150‑1 (MQ=255)                                                                                                                                     gCGTCGCACCAGGCAGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGGTGTCGCCGGCGGAGACGAAGGTGGCGAACAGCGAAATGGCCACCAGAATCAGCGCCGGAATGAACCAGaa          <  1:363386/150‑1 (MQ=255)                                                                                                                                             ccaggcCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGGTGTCGCCGGCGGAGACGAAGGTGGCGAACAGCGAAATGGCCACCAGAATCAGCGCCGGAATGAACCAGAAGCTGCCGa  <  1:455230‑M2/144‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                GCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCGCACCAGGCCGTTGAGCACCATGCACACCACCACCAGCACGGTGCACATCAGCGACTGGCGCAGGGCGGTGCTGGTGTCGCCGGCGGAGACGAAGGTGGCGAACAGCGAAATGGCCACCAGAATCAGCGCCGGAATGAACCAGAAGCTGCCGA  >  NC_002947/1928841‑1929130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.