| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2209598 | 36 (1.220) | 6 (0.220) | 6/228 | NT | 14.4% | coding (871/948 nt) | PP_1952 | metallo‑beta‑lactamase family protein |
| ? | NC_002947 | = 2209615 | 38 (1.390) | coding (888/948 nt) | PP_1952 | metallo‑beta‑lactamase family protein | |||||
CACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2209504‑2209598‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccttggcGACGTGGCCTATGCCAGGCCAAGGAAAGTGGTAGCCATGGGTCATCAAGCGGTTCTGGGCGAGGAAGTCCAGGATACGTCGGCGTGACGTTACGGAAAGGTCAGAGTCAGTGTCATAGCTGATCTTCCACTCCGGGTGACGTAACGC < NC_002947/2209615‑2209469 CACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCGACGTGGCCTATGCCAGGCCAAGGA > 1:638688/1‑120CACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCGACGTGGCCTATGCCAGGCCAAGGA < 2:638688/120‑1 TGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCGACGTGGCCTATGCCAGGCCAAGGAAA < 1:743870/119‑1 TGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCGACGTGGCCTATGCCAGGCCAAGGAAA > 2:743870/1‑119 CTTGATGACCCATGGCTACCACCTTCCTTGGCGACGTGGCCTATGCCAGGCCAAGGAAAGTGGTAGCCATGGGTCATCAAGCGGTTCTGGGCGAGGAAGTCCAGGATACGTCGGCGTGACGTTACGGAAAGGTCAGAGTCA > 1:389279/1‑141 CTTGATGACCCATGGCTACCACCTTCCTTGGCGACGTGGCCTATGCCAGGCCAAGGAAAGTGGTAGCCATGGGTCATCAAGCGGTTCTGGGCGAGGAAGTCCAGGATACGTCGGCGTGACGTTACGGAAAGGTCAGAGTCA < 2:389279/141‑1 GGCGACGTGGCCTATGCCAGGCCAAGGAAAGTGGTAGCCATGGGTCATCAAGCGGTTCTGGGCGAGGAAGTCCAGGATACGTCGGCGTGACGTTACGGAAAGGTCAGAGTCAGTGTCATAGCTGATCTTCCACTCCGGGTGACGTAACGC > 2:279318/1‑150 CACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2209504‑2209598‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccttggcGACGTGGCCTATGCCAGGCCAAGGAAAGTGGTAGCCATGGGTCATCAAGCGGTTCTGGGCGAGGAAGTCCAGGATACGTCGGCGTGACGTTACGGAAAGGTCAGAGTCAGTGTCATAGCTGATCTTCCACTCCGGGTGACGTAACGC < NC_002947/2209615‑2209469 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |