New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2209598 | 36 (1.220) | 6 (0.220) | 6/228 | NT | 14.4% | coding (871/948 nt) | PP_1952 | metallo‑beta‑lactamase family protein |
? | NC_002947 | = 2209615 | 38 (1.390) | coding (888/948 nt) | PP_1952 | metallo‑beta‑lactamase family protein |
GCATCACCACATCCTGGCGTTACGTCACCCGGAGTGGAAGATCAGCTATGACACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAATTTGTAATTAGACATTTCACTATACTGGAGTACAGTGAATGTGTCGGAAT > NC_002947/2209453‑2209747 | gcATCACCACATCCTGGCGTTACGTCACCCGGAGTGGAAGATCAGCTATGACACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTg < 1:773499/149‑1 (MQ=255) gcATCACCACATCCTGGCGTTACGTCACCCGGAGTGGAAGATCAGCTATGACACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTg > 2:773499/1‑149 (MQ=255) accacATCCTGGCGTTACGTCACCCGGAGTGGAAGATCAGCTATGACACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAg < 2:605040/150‑1 (MQ=255) aTCCTGGCGTTACGTCACCCGGAGTGGAAGATCAGCTATGACACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGATTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCAc < 1:185690/150‑1 (MQ=255) cTGGCTTTACGTCCCCCGGAGTGGAAGATCATCTAGGACACTTTTTCTTACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGcactgga < 1:229329/150‑7 (MQ=255) gCGTTACGTCACCCGGAGTGGAAGATCAGCTATGACACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCgcc > 2:279318‑M2/1‑147 (MQ=255) tGGAAGATCAGCTATGACACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTAt > 2:118122/1‑150 (MQ=255) gAAGATCAGCTATGACACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACg < 1:684295/143‑1 (MQ=255) gAAGATCAGCTATGACACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACg > 2:684295/1‑143 (MQ=255) aaGATCAGCTATGACACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGc < 1:245356/150‑1 (MQ=255) tCAGCTATGACACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGa > 2:708648/1‑150 (MQ=255) tATGACACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAg < 2:552811/109‑1 (MQ=255) tATGACACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAg > 1:552811/1‑109 (MQ=255) cacTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCgacgtggcctatgccaggccaagga < 2:638688‑M1/120‑26 (MQ=255) cacTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCgacgtggcctatgccaggccaagga > 1:638688‑M1/1‑95 (MQ=255) tGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCgacgtggcctatgccaggccaaggaaa > 2:743870‑M1/1‑92 (MQ=255) tGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCgacgtggcctatgccaggccaaggaaa < 1:743870‑M1/119‑28 (MQ=255) tGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCgccaaggaaggtggtagccatgggtcatcaag < 2:389279‑M2/141‑33 (MQ=255) tGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCgccaaggaaggtggtagccatgggtcatcaag > 1:389279‑M2/1‑109 (MQ=255) tctGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCAt > 1:215375/1‑150 (MQ=255) aCCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCt > 1:182206/1‑150 (MQ=255) cTTTCCGTAACGTCACGCCGACGTATCCTGGCCTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTAt < 2:99909/150‑1 (MQ=255) gTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATGGGCCACGTCGCCAAGGAAGGTGACg > 1:460347/1‑109 (MQ=255) gTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCATTGGCCTGGCATGGGCCACGTCGCCAAGGAAGGTGACg < 2:460347/109‑1 (MQ=255) gCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTAt > 2:600259/1‑134 (MQ=255) gCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTAt < 1:600259/134‑1 (MQ=255) ttCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAAtt > 1:674994/1‑150 (MQ=255) tCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAAttt > 1:278794/1‑150 (MQ=255) tCGCCCAGAACCGCTTGATGGCCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAATTTGTa < 2:215375/150‑1 (MQ=255) tCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTAt < 1:381243/113‑1 (MQ=255) tCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTAt > 2:381243/1‑113 (MQ=255) tCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAATTTGTa > 1:356867/1‑150 (MQ=255) gCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAATTTGTaa < 1:600395/149‑1 (MQ=255) gCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAATTTGTaa > 2:600395/1‑149 (MQ=255) gCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAATTTGTAAt < 2:182206/150‑1 (MQ=255) cTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTtctc > 1:299648/1‑92 (MQ=255) cTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTtctc < 2:299648/92‑1 (MQ=255) cTTGATGACCCATGGCTACCACCTTCCTTGGCgacgtggcctatgccaggccaaggaaagtggtagccatgggtcatcaagcggttctgggcgaggaagtccaggatacgtcggcgtgacgttacggaaaggtcagagtca > 1:389279‑M1/1‑32 (MQ=255) cTTGATGACCCATGGCTACCACCTTCCTTGGCgacgtggcctatgccaggccaaggaaagtggtagccatgggtcatcaagcggttctgggcgaggaagtccaggatacgtcggcgtgacgttacggaaaggtcagagtca < 2:389279‑M1/141‑110 (MQ=255) cATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCCTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAATTTGTAATTAGACATTTCACTATACTGGa < 1:708648/150‑1 (MQ=255) tACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTaaaa < 2:766262/95‑1 (MQ=255) tACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTaaaa > 1:766262/1‑95 (MQ=255) cACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTtc < 2:248448/71‑1 (MQ=255) cACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTtc > 1:248448/1‑71 (MQ=255) cTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAATTTGTAATTAGACATTTCACTATACTGGAGTACAGTGAAt < 2:323932/150‑1 (MQ=255) tttCCTTGGCCTGGCATAGGCCACGTCgccaaggaaagtggtagccatgggtcatcaagcggttctgggcgaggaagtccaggatacgtcggcgtgacgttacggaaaggtcagagtca > 2:743870‑M2/1‑27 (MQ=255) tttCCTTGGCCTGGCATAGGCCACGTCgccaaggaaagtggtagccatgggtcatcaagcggttctgggcgaggaagtccaggatacgtcggcgtgacgttacggaaaggtcagagtca < 1:743870‑M2/119‑93 (MQ=255) ttCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAATTTGTAATTAGACATTTCACTATACTGGAGTACAGTGAAtgt < 1:118122/150‑1 (MQ=255) ttCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTAGATCGCTTCGCCTTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAATTTGTAATTAGACATTTCACTATACTGGAGTACAGTGAAtgt < 2:278794/150‑1 (MQ=255) tCCTTGGCCTGGCATAGGCCACGTCgccaaggaaagtggtagccatgggtcatcaagcggttctgggcgaggaagtccaggatacgtcggcgtgacgttacggaaaggtcagagtcagtg < 2:638688‑M2/120‑96 (MQ=255) tCCTTGGCCTGGCATAGGCCACGTCgccaaggaaagtggtagccatgggtcatcaagcggttctgggcgaggaagtccaggatacgtcggcgtgacgttacggaaaggtcagagtcagtg > 1:638688‑M2/1‑25 (MQ=255) ttGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAATTTGTAATTAGACATTTCACTATACTGGAGTACAGTGAATGTGTCg > 1:79782/1‑150 (MQ=255) ttGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAATTTGTAATTAGACATTTCACTATACTGGAGTACAGTGAATGTGTCg > 1:249477/1‑150 (MQ=255) ttGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAATTTGTAATTAGACATTTCACTATACTGGAGTACAGTGAATGTGTCg < 2:207406/150‑1 (MQ=255) ttGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAATTTGTAATTAGACATTTCACTATACTGGAGTACAGTGAATGTGTCg > 1:207406/1‑150 (MQ=255) ggCgacgtggcctatgccaggccaaggaaagtggtagccatgggtcatcaagcggttctgggcgaggaagtccaggatacgtcggcgtgacgttacggaaaggtcagagtcagtgtcatagctgatcttccactccgggtgacgtaacgc > 2:279318‑M1/1‑3 (MQ=255) ccTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAATTTGTAATTAGACATTTCACTATACTGGAGTACAGTGAATGTGTCGGAat < 2:573119/150‑1 (MQ=255) | GCATCACCACATCCTGGCGTTACGTCACCCGGAGTGGAAGATCAGCTATGACACTGACTCTGACCTTTCCGTAACGTCACGCCGACGTATCCTGGACTTCCTCGCCCAGAACCGCTTGATGACCCATGGCTACCACTTTCCTTGGCCTGGCATAGGCCACGTCGCCAAGGAAGGTGACGGCTATCGCTGGATCGCTTCGCCTTCTCATACCTATCTGATCTAAAACCCCTTAAAAATAGTGCGAATTTGTAATTAGACATTTCACTATACTGGAGTACAGTGAATGTGTCGGAAT > NC_002947/2209453‑2209747 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |