| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2930335 = | 21 (0.710) | 4 (0.140) | 4/234 | NT | 17.4% | coding (3810/4890 nt) | PP_2566 | leucine‑rich repeat‑containing protein |
| ? | NC_002947 | 2930359 = | 18 (0.640) | coding (3786/4890 nt) | PP_2566 | leucine‑rich repeat‑containing protein | |||||
GAACCTTTCGTCCAACCGCATTCGTACCCTGCCAGACTTGCCTGGTGTGCTGCGTACCCCGTTTGCCCGCGATGTCGCCGCGCACTTGCCGGAGCGCCGTTGGCTGTTCAACTACAACACCCTGGAAGCCCAGACACGTGCAC‑‑GCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2930485‑2930335‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggcTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCAGGCAAGTCTGGCAGGGTACGAATGCGGTTGGACGAAAGGTTCAGATAGCGCAGTTGGTACTGGG > NC_002947/2930359‑2930507 GAACCTTTCGTCCAACCGCATTCGTACCCTGCCAGACTTGCCTGGTGTGCTGCGTACCCCGTTTGCCCGCGATGTCGCCGCGCACTTGCCGGAGCGCCGTTGGCTGTTCAACTACAACACCCTGGAAGCCCAGACACGTGCAC‑‑GCCTGGG < 1:464997/150‑1GAACCTTTCGTCCAACCGCATTCGTACCCTGCCAGACTTGCCTGGTGTGCTGCGTACCCCGTTTGCCCGCGATGTCGCCGCGCACTTGCCGGAGCGCCGTTGGCTGTTCAACTACAACACCCTGGAAGCCCAGACACGTGCAC‑‑GCCTGGG < 2:728415/150‑1 TGGTGTGCTGCGTACCCCGTTTGCCCGCGATGTCGCCGCGCACTTGCCGGAGCGCCGTTGGCTGTTCAACTACAACACCCTGGAAGCCCAG‑‑GCGTGCACGTGTCTGGGCTTCCAGGGT > 1:159413/1‑118 TGGTGTGCTGCGTACCCCGTTTGCCCGCGATGTCGCCGCGCACTTGCCGGAGCGCCGTTGGCTGTTCAACTACAACACCCTGGAAGCCCAG‑‑GCGTGCACGTGTCTGGGCTTCCAGGGT < 2:159413/118‑1 GTGCTGCGTACCCCGTTTGCCCGCGATGTCGCCGCGCACTTGCCGGAGCGCCGTTGGCTGTTCAACTACAACACCCTGGAAGCCCAGACACGTGCAC‑‑GCCT > 1:675512/1‑101 GTGCTGCGTACCCCGTTTGCCCGCGATGTCGCCGCGCACTTGCCGGAGCGCCGTTGGCTGTTCAACTACAACACCCTGGAAGCCCAGACACGTGCAC‑‑GCCT < 2:675512/101‑1 CTGGAAGCCCAGACACGTGCAC‑‑GCCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAA < 1:794338/72‑1 CTGGAAGCCCAGACACGTGCAC‑‑GCCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAA > 2:794338/1‑72 TGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTATGCAGCACACCAGGCAAGTCTGGCAGGGTACGAATGCGGTTGGACGAAAGGTTCAGATAGCGCAGTTGGTAC > 1:51869/1‑150 CTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCAGGCAAGTCTGGCAGGGTACGAATGCGGTTGGACGAAAGGTTCAGATAGCGCAGTTGGTACTGGG < 2:464997/150‑1 GAACCTTTCGTCCAACCGCATTCGTACCCTGCCAGACTTGCCTGGTGTGCTGCGTACCCCGTTTGCCCGCGATGTCGCCGCGCACTTGCCGGAGCGCCGTTGGCTGTTCAACTACAACACCCTGGAAGCCCAGACACGTGCAC‑‑GCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2930485‑2930335‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggcTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCAGGCAAGTCTGGCAGGGTACGAATGCGGTTGGACGAAAGGTTCAGATAGCGCAGTTGGTACTGGG > NC_002947/2930359‑2930507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |