New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2930335 =	21 (0.710)	4 (0.140)	4/234	NT	17.4%	coding (3810/4890 nt)	PP_2566	leucine‑rich repeat‑containing protein
	?	NC_002947	2930359 =	18 (0.640)					coding (3786/4890 nt)	PP_2566	leucine‑rich repeat‑containing protein

CGTTCGAGTACGCCCAGCAGCGCTGCGTTTTCACCTTGGTCGAACAGATCGCTCCACAGCTGCTCCTCGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCAGGCAAGTCTGGCAGGGTACGAATGCGGTTG  >  NC_002947/2930186‑2930473                                                                                                                                                      |                                                                                                                                             cccagtaccaactgcgctatctgaacctttcgtccaaccgcattcgtaccctgccagacttgcctggtgtgctgcgtaccccgtttgcccgcgatgtcgccgcgcacttgccggagcgccgttggctgttcaactacaacaccctggaag                                                                                                                                              <  2:464997‑M1/1‑1 (MQ=255)  gTTCGAGTACGCCCAGCAGCGCTGCGTTTTCACCTTGGTCGAACAGATCGCTCCACAGCTGCTCCTCGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCCTCTGCGTGTTCGAAGACGTTGACGCCGCtgctgc                                                                                                                                             >  1:67593/1‑150 (MQ=255)     gtaccaactgcgctatctgaacctttcgtccaaccgcattcgtaccctgccagacttgcctggtgtgctgcataccccgtttgcccgcgatgtcgccgcgcacttgccggagcgccgttggctgttcaactacaacaccctggaaGCCCa                                                                                                                                          >  1:51869‑M1/146‑150 (MQ=255)            gCCCAGCAGCGCTGCGTTTTCACCTTGGTCGAACAGATCGCTCCACAGCTGCTCCTCGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGc                                                                                                                                 >  1:502723/1‑150 (MQ=255)              ccAGCAGCGCTGCGTTTTCACCTTGGTCGAACAGATCGCTCCACAGCTGCTCCTCGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCCTCTGGGGTTTCTATTGGTGGGACGCGGCTGCTGCCCAGGC‑‑GTGCaa                                                                                                                               >  2:130867/1‑149 (MQ=255)                    gcgcTGCGTTTTCACCTTGGTCGAACAGATCGCTCCACAGCTGCTCCTCGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCt                                                                                                                         >  1:314225/1‑150 (MQ=255)                                   cTTGGTCGAACAGATCGCTCCACAGCTGCTCCTCGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGcc                                                                                                                                            <  2:427035/118‑1 (MQ=255)                                   cTTGGTCGAACAGATCGCTCCACAGCTGCTCCTCGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGcc                                                                                                                                            >  1:427035/1‑118 (MQ=255)                                        tCGAACAGATCGCTCCACAGCTGCTCCTCGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAg                                                                                                     <  2:182310/150‑1 (MQ=255)                                             cAGATCGCTCCACAGCTGCTCCTCGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGaa                                                                                                <  2:374491/150‑1 (MQ=255)                                                     tCCACAGCTGCTCCTCGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGACAAc                                                                                        >  2:325189/1‑150 (MQ=255)                                                                   tcGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAg                                                                          >  1:197386/1‑150 (MQ=255)                                                                               gcctcgccACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGACCACGGCGGTCCGGCGAGTGGGCGGCGAct                                                              >  2:247640/1‑149 (MQ=255)                                                                                   cgccACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATcgc                                                          <  2:314225/150‑1 (MQ=255)                                                                                    atctcGGAAAACGCCTTGCCACAGTGGCACGTCATCTGCGTGTTCGAGGACGGTGACGCCGCTGCTGCCCAGGC‑‑GTGCACATGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACCGCGCTCCGGCAAGGGCGCGGCGACATcgcg                                                         <  1:271470/146‑1 (MQ=255)                                                                                     ccACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCgg                                                        <  2:197386/150‑1 (MQ=255)                                                                                      cACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCggg                                                       <  1:326797/150‑1 (MQ=255)                                                                                         ggAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAAACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACATGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCCGCAGGTGCGCGGCGACATCGCggaaaa                                                    >  2:271470/1‑146 (MQ=255)                                                                                              aCGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACggg                                               <  2:502723/150‑1 (MQ=255)                                                                                              aCGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACggg                                               <  1:247640/150‑1 (MQ=255)                                                                                                  cTTGCCTCAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCCGGC‑‑GTGCACGTGTCTGGGCTTCCAGGgtgt                                                                                                          >  1:544421/1‑87 (MQ=255)                                                                                                  cTTGCCTCAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCCGGC‑‑GTGCACGTGTCTGGGCTTCCAGGgtgt                                                                                                          <  2:544421/87‑1 (MQ=255)                                                                                                            ttgccggagcgccgttggctgttcaactacaacaccctggaaGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAg                                                                                                               >  2:794338‑M1/43‑72 (MQ=255)                                                                                                            ttgccggagcgccgttggctgttcaactacaacaccctggaaGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAg                                                                                                               <  1:794338‑M1/30‑1 (MQ=255)                                                                                                                                 gAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCAGGCAAGTCTgg                     >  2:480662/1‑141 (MQ=255)                                                                                                                                 gAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCAGGCAAGTCTgg                     <  1:480662/141‑1 (MQ=255)                                                                                                                                      cGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCAGGCAAGTCTGGCAGGGTACGAATGc       <  1:783212/150‑1 (MQ=255)                                                                                                                                           cagccgcTGCTGCCCAGGC‑‑GTGTACGCGCATGAGCGTACAAGGTGTTGTAGTCGAACAGCCAACGGCGCTCCGGCAAGCGCGCGGCGACATCGTGGGCAATTCGGGTATGTAGCTCTCCAGGCTTGTCTGGCAGGGTTCGAATGCgagtg  <  2:48753/148‑5 (MQ=255)                                                                                                                                             accctggaaGCCCAGACACGTGCACGC‑‑CTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCa                                <  2:159413‑M1/109‑1 (MQ=255)                                                                                                                                             accctggaaGCCCAGACACGTGCACGC‑‑CTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCa                                >  1:159413‑M1/10‑118 (MQ=255)                                                                                                                                                      |                                                                                                                                             CGTTCGAGTACGCCCAGCAGCGCTGCGTTTTCACCTTGGTCGAACAGATCGCTCCACAGCTGCTCCTCGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCAGGCAAGTCTGGCAGGGTACGAATGCGGTTG  >  NC_002947/2930186‑2930473

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.