| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2930335 = | 21 (0.710) | 4 (0.140) | 4/234 | NT | 17.4% | coding (3810/4890 nt) | PP_2566 | leucine‑rich repeat‑containing protein |
| ? | NC_002947 | 2930359 = | 18 (0.640) | coding (3786/4890 nt) | PP_2566 | leucine‑rich repeat‑containing protein | |||||
TCGAACAGATCGCTCCACAGCTGCTCCTCGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCAGGCAAGTCTGGCAGGGTACGAATGCGGTTGGACGAAAGGTTCAGATAGCGCAGTTGGTACTGGG > NC_002947/2930225‑2930507 | tCGAACAGATCGCTCCACAGCTGCTCCTCGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAg < 2:182310/150‑1 (MQ=255) cAGATCGCTCCACAGCTGCTCCTCGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGaa < 2:374491/150‑1 (MQ=255) tCCACAGCTGCTCCTCGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGACAAc > 2:325189/1‑150 (MQ=255) tggtgtgctgcgtaccccgtttgcccgcgatgtcgccgcgcacttgccggagcgccgttggctgttcaactacaacaccctggaagcccaggcgtgcacgtgtctgggcTTCCAGGgt > 1:159413‑M2/110‑118 (MQ=255) tggtgtgctgcgtaccccgtttgcccgcgatgtcgccgcgcacttgccggagcgccgttggctgttcaactacaacaccctggaagcccaggcgtgcacgtgtctgggcTTCCAGGgt < 2:159413‑M2/9‑1 (MQ=255) tcGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAg > 1:197386/1‑150 (MQ=255) gcctcgccACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGACCACGGCGGTCCGGCGAGTGGGCGGCGAct > 2:247640/1‑149 (MQ=255) cgccACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATcgc < 2:314225/150‑1 (MQ=255) atctcGGAAAACGCCTTGCCACAGTGGCACGTCATCTGCGTGTTCGAGGACGGTGACGCCGCTGCTGCCCAGGC‑‑GTGCACATGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACCGCGCTCCGGCAAGGGCGCGGCGACATcgcg < 1:271470/146‑1 (MQ=255) ccACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCgg < 2:197386/150‑1 (MQ=255) cACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCggg < 1:326797/150‑1 (MQ=255) ggAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAAACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACATGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCCGCAGGTGCGCGGCGACATCGCggaaaa > 2:271470/1‑146 (MQ=255) aCGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACggg < 2:502723/150‑1 (MQ=255) aCGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACggg < 1:247640/150‑1 (MQ=255) cTTGCCTCAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCCGGC‑‑GTGCACGTGTCTGGGCTTCCAGGgtgt < 2:544421/87‑1 (MQ=255) cTTGCCTCAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCCGGC‑‑GTGCACGTGTCTGGGCTTCCAGGgtgt > 1:544421/1‑87 (MQ=255) ttgccggagcgccgttggctgttcaactacaacaccctggaaGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAg < 1:794338‑M1/30‑1 (MQ=255) ttgccggagcgccgttggctgttcaactacaacaccctggaaGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAg > 2:794338‑M1/43‑72 (MQ=255) gAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCAGGCAAGTCTgg < 1:480662/141‑1 (MQ=255) gAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCAGGCAAGTCTgg > 2:480662/1‑141 (MQ=255) cGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCAGGCAAGTCTGGCAGGGTACGAATGc < 1:783212/150‑1 (MQ=255) cagccgcTGCTGCCCAGGC‑‑GTGTACGCGCATGAGCGTACAAGGTGTTGTAGTCGAACAGCCAACGGCGCTCCGGCAAGCGCGCGGCGACATCGTGGGCAATTCGGGTATGTAGCTCTCCAGGCTTGTCTGGCAGGGTTCGAATGCgagtg < 2:48753/148‑5 (MQ=255) accctggaaGCCCAGACACGTGCACGC‑‑CTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCa < 2:159413‑M1/109‑1 (MQ=255) accctggaaGCCCAGACACGTGCACGC‑‑CTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCa > 1:159413‑M1/10‑118 (MQ=255) ctggaagcccagacacgtgcacgcctgggcTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCaa > 2:794338‑M2/31‑72 (MQ=255) ctggaagcccagacacgtgcacgcctgggcTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCaa < 1:794338‑M2/42‑1 (MQ=255) CCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCAGGCAAGTCTGGCAGGGTACGAATGCGGTTGGACGAAAGGTTc < 2:728415‑M1/150‑1 (MQ=255) CCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCAGGCAAGTCTGGCAGGGTACGAATGCGGTTGGACGAAAGGTTc < 1:464997‑M1/150‑1 (MQ=255) AGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGcac > 1:675512‑M1/1‑101 (MQ=255) AGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGcac < 2:675512‑M1/101‑1 (MQ=255) tgggcTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTATGCAGCACACCAGGCAAGTCTGGCAGGGTACGAATGCGGTTGGACGAAAGGTTCAGATAGCGCAGTTGGTAc > 1:51869‑M2/6‑150 (MQ=255) cTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCAGGCAAGTCTGGCAGGGTACGAATGCGGTTGGACGAAAGGTTCAGATAGCGCAGTTGGTACTggg < 2:464997‑M2/149‑1 (MQ=255) | TCGAACAGATCGCTCCACAGCTGCTCCTCGGCATTGCTCGCCTCGCCACGGAAAACGCCTTGCCACAGTGGCACGTCTTCTGCGTGTTCGAAGACGTTGACGCCGCTGCTGCCCAGGC‑‑GTGCACGTGTCTGGGCTTCCAGGGTGTTGTAGTTGAACAGCCAACGGCGCTCCGGCAAGTGCGCGGCGACATCGCGGGCAAACGGGGTACGCAGCACACCAGGCAAGTCTGGCAGGGTACGAATGCGGTTGGACGAAAGGTTCAGATAGCGCAGTTGGTACTGGG > NC_002947/2930225‑2930507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |