New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3400633 =	28 (0.950)	5 (0.170)	5/244	NT	14.1%	intergenic (‑21/+83)	PP_3006/PP_3007	ECF family RNA polymerase sigma‑70 factor/hypothetical protein
	?	NC_002947	3400673 =	33 (1.130)					intergenic (‑61/+43)	PP_3006/PP_3007	ECF family RNA polymerase sigma‑70 factor/hypothetical protein

ATGATCTACGCTCGATGGCAAGCCCCCCGGCTGGATGGCCGGGGTACTTGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3400686‑3400633 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGG  >  NC_002947/3400673‑3400768                                                                                                                                                        ATGATCTACGCTCGATGGCAAGCCCCCCGGCTGGATGGCCGGGGTACTTGCCTTCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGACTGGTACTGGACGACCTGCCTGG  >  1:306734/1‑150            TCGATGGCAAGCCCCCCGGCTGGATGGCCGGGGTACTTGCCTTCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGAC          >  1:429542/1‑131            TCGATGGCAAGCCCCCCGGCTGGATGGCCGGGGTACTTGCCTTCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGAC          <  2:429542/131‑1              GATGGCAAGCCCCCCGGCTGGATGGCCGGGGTACTTGCCTTCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTG                                                <  1:380203/91‑1              GATGGCAAGCCCCCCGGCTGGATGGCCGGGGTACTTGCCTTCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTG                                                >  2:380203/1‑91                                                                                                                                                        ATGATCTACGCTCGATGGCAAGCCCCCCGGCTGGATGGCCGGGGTACTTGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3400686‑3400633 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGG  >  NC_002947/3400673‑3400768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.