New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3400633 =	28 (0.950)	5 (0.170)	5/244	NT	14.1%	intergenic (‑21/+83)	PP_3006/PP_3007	ECF family RNA polymerase sigma‑70 factor/hypothetical protein
	?	NC_002947	3400673 =	33 (1.130)					intergenic (‑61/+43)	PP_3006/PP_3007	ECF family RNA polymerase sigma‑70 factor/hypothetical protein

ATACGCCGGGCAACGCCCAGCAGGCGCGCGCCTTCGTGATCGTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTG  >  NC_002947/3400485‑3400776                                                                                                                                                     |                                                                                                                                                aTACGCCGGGCAACGCCCAGCAGGCGCGCGCCTTCGTGATCGTAGAGCGCCTGCAGGGCCCGTCGGTCACACATTTCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTaa                                                                                                                                                <  1:52123/150‑1 (MQ=255)  tACGCCGGGCAACGCCCAGCAGGCGCGCGCCTTCGTGATCGTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAg                                                                                                                                               <  2:34293/150‑1 (MQ=255)     gCCGGGCAACGCCCAGCAGGCGCGCGCCTTCGTGATCGTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCa                                                                                                                                            >  2:21419/1‑150 (MQ=255)        gggCAACGCCCAGCAGGCGCGCGCCTTCGTGATCGTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTAGCGGCCATGTTGAACGCAAGt                                                                                                                                         >  2:569005/1‑150 (MQ=255)                 ccAGCAGGCGCGCGCCTTCGTGATCGTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGcc                                                                                                                                >  2:693183/1‑150 (MQ=255)                    gcagGCGCGCGCCTTCGTGATCGTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATc                                                                                                                             <  2:471936/150‑1 (MQ=255)                                          gTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCAGGCCATCCAGCCGGGGGGCTTGCCATCGa                                                                                                       >  1:139375/1‑150 (MQ=255)                                            agagCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGc                                                                                                     <  2:486722/150‑1 (MQ=255)                                                     ccaggcaggtcgtccagtaccagtctgactatgtgttctggacagccaagtgacacgcacccgaccctacgccctgcgagtgatgatctacgctcgAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGatcat                                                                                            >  1:306734‑M1/97‑150 (MQ=255)                                                      cAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGatcatc                                                                                           <  1:767197/150‑1 (MQ=255)                                                             gtcgtccagtaccaggctgactatgtgttctggacagccaagtgacacgcacccgaccctacgccctgcgagtgatgatctacgctcgAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGa                                                                                                       <  2:429542‑M1/43‑1 (MQ=255)                                                             gtcgtccagtaccaggctgactatgtgttctggacagccaagtgacacgcacccgaccctacgccctgcgagtgatgatctacgctcgAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGa                                                                                                       >  1:429542‑M1/89‑131 (MQ=255)                                                                 ggTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCAGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGc                                                                                <  2:139375/150‑1 (MQ=255)                                                                      cccTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAgg                                                                           >  2:258157/1‑150 (MQ=255)                                                                        cTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCTGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGt                                                                         >  1:48179/1‑150 (MQ=255)                                                                        cTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGt                                                                         >  1:605135/1‑150 (MQ=255)                                                                        cTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGt                                                                         >  2:483639/1‑150 (MQ=255)                                                                                   cTAACAGGCAGCGGTGGGAGTAGCAGGGGGGCGCCGTCCAGTGCAACATCAGAGGCCTCTTACTTTACTCGGTGGACGCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGGAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCgtgt                                                              <  1:14238/150‑1 (MQ=255)                                                                                      aCAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCAc                                                           <  1:21419/150‑1 (MQ=255)                                                                                             gtggTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTg                                                        <  1:464318/144‑1 (MQ=255)                                                                                             gCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTg                                                        >  2:464318/1‑146 (MQ=255)                                                                                                gTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTcc                                                 >  2:621865/1‑150 (MQ=255)                                                                                                  ggAAGTCGAAGGGGGCGTCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTCTTCCGATCTTGTAGCCGAAGCGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAg                                               <  1:258157/150‑1 (MQ=255)                                                                                                   caagtgacacgcacccgaccctacgccctgcgagtgatgatctacgctcgAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATc                                                                                                         <  1:380203‑M1/41‑1 (MQ=255)                                                                                                   caagtgacacgcacccgaccctacgccctgcgagtgatgatctacgctcgAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATc                                                                                                         >  2:380203‑M1/51‑91 (MQ=255)                                                                                                        cGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAAcaca                                         >  2:476830/1‑150 (MQ=255)                                                                                                           aGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTgg                                                       <  1:155168/133‑1 (MQ=255)                                                                                                           aGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTgg                                                       >  2:155168/1‑133 (MQ=255)                                                                                                                   gccggcGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGCACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTg                              <  1:569005/150‑1 (MQ=255)                                                                                                                   gccggcGAGTTCAACGTGTGTGGCTCCCCAAATTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTg                              >  1:20345/1‑150 (MQ=255)                                                                                                                         gAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACtt                                                         <  2:104729/117‑1 (MQ=255)                                                                                                                         gAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACtt                                                         >  1:104729/1‑117 (MQ=255)                                                                                                                            ttCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGgac                     <  1:693183/150‑1 (MQ=255)                                                                                                                                           ttcgtcctgtAAGCTAAGTACGCAGGTCAACCCGCCGTGCTGATTGCCAGCGATCTTACATTATATGTCTCAGGGCGTTGGGTCGGGGGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCGGGCAcc      <  2:48179/143‑1 (MQ=255)                                                                                                                                               ttGTGTAAGGCAAGTACCCCGGCCATCCAGCGGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTg  >  2:298549/1‑150 (MQ=255)                                                                                                                                               ttGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTg  >  2:437156/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                ATACGCCGGGCAACGCCCAGCAGGCGCGCGCCTTCGTGATCGTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTG  >  NC_002947/3400485‑3400776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.