| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3400633 = | 28 (0.950) | 5 (0.170) | 5/244 | NT | 14.1% | intergenic (‑21/+83) | PP_3006/PP_3007 | ECF family RNA polymerase sigma‑70 factor/hypothetical protein |
| ? | NC_002947 | 3400673 = | 33 (1.130) | intergenic (‑61/+43) | PP_3006/PP_3007 | ECF family RNA polymerase sigma‑70 factor/hypothetical protein | |||||
GTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTGCGCCGTGCAGTCGACTG‑ACGGCGCC > NC_002947/3400526‑3400806 | gTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCAGGCCATCCAGCCGGGGGGCTTGCCATCGa > 1:139375/1‑150 (MQ=255) agagCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGc < 2:486722/150‑1 (MQ=255) ccaggcaggtcgtccagtaccagtctgactatgtgttctggacagccaagtgacacgcacccgaccctacgccctgcgagtgatgatctacgctcgAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGatcat > 1:306734‑M1/97‑150 (MQ=255) cAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGatcatc < 1:767197/150‑1 (MQ=255) gtcgtccagtaccaggctgactatgtgttctggacagccaagtgacacgcacccgaccctacgccctgcgagtgatgatctacgctcgAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGa < 2:429542‑M1/43‑1 (MQ=255) gtcgtccagtaccaggctgactatgtgttctggacagccaagtgacacgcacccgaccctacgccctgcgagtgatgatctacgctcgAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGa > 1:429542‑M1/89‑131 (MQ=255) ggTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCAGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGc < 2:139375/150‑1 (MQ=255) cccTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAgg > 2:258157/1‑150 (MQ=255) cTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCTGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGt > 1:48179/1‑150 (MQ=255) cTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGt > 2:483639/1‑150 (MQ=255) cTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGt > 1:605135/1‑150 (MQ=255) cTAACAGGCAGCGGTGGGAGTAGCAGGGGGGCGCCGTCCAGTGCAACATCAGAGGCCTCTTACTTTACTCGGTGGACGCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGGAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCgtgt < 1:14238/150‑1 (MQ=255) aCAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCAc < 1:21419/150‑1 (MQ=255) gtggTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTg < 1:464318/144‑1 (MQ=255) gCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTg > 2:464318/1‑146 (MQ=255) gTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTcc > 2:621865/1‑150 (MQ=255) ggAAGTCGAAGGGGGCGTCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTCTTCCGATCTTGTAGCCGAAGCGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAg < 1:258157/150‑1 (MQ=255) caagtgacacgcacccgaccctacgccctgcgagtgatgatctacgctcgAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATc < 1:380203‑M1/41‑1 (MQ=255) caagtgacacgcacccgaccctacgccctgcgagtgatgatctacgctcgAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATc > 2:380203‑M1/51‑91 (MQ=255) cGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAAcaca > 2:476830/1‑150 (MQ=255) aGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTgg < 1:155168/133‑1 (MQ=255) aGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTgg > 2:155168/1‑133 (MQ=255) gccggcGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGCACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTg < 1:569005/150‑1 (MQ=255) gccggcGAGTTCAACGTGTGTGGCTCCCCAAATTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTg > 1:20345/1‑150 (MQ=255) gAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACtt > 1:104729/1‑117 (MQ=255) gAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACtt < 2:104729/117‑1 (MQ=255) ttCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGgac < 1:693183/150‑1 (MQ=255) atgatctacgctcgatggcaagccccccggctggatggccggggtacttgccttCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGACTGGTACTGGACGACCTGCCTgg > 1:306734‑M2/55‑150 (MQ=255) ttcgtcctgtAAGCTAAGTACGCAGGTCAACCCGCCGTGCTGATTGCCAGCGATCTTACATTATATGTCTCAGGGCGTTGGGTCGGGGGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCGGGCAcc < 2:48179/143‑1 (MQ=255) ttGTGTAAGGCAAGTACCCCGGCCATCCAGCGGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTg > 2:298549/1‑150 (MQ=255) ttGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTg > 2:437156/1‑150 (MQ=255) tcgatggcaagccccccggctggatggccggggtacttgccttCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGgacgac < 2:429542‑M2/88‑1 (MQ=255) tcgatggcaagccccccggctggatggccggggtacttgccttCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGgacgac > 1:429542‑M2/44‑131 (MQ=255) gatggcaagccccccggctggatggccggggtacttgccttCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTg > 2:380203‑M2/42‑91 (MQ=255) gatggcaagccccccggctggatggccggggtacttgccttCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTg < 1:380203‑M2/50‑1 (MQ=255) aGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTgcg > 1:71783/1‑150 (MQ=255) ggCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATa < 1:471054/105‑1 (MQ=255) ggCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATa > 2:471054/1‑105 (MQ=255) aGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCgt > 2:221163/1‑76 (MQ=255) aGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCgt < 1:221163/76‑1 (MQ=255) gTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTGCGCCGTGc > 2:245136/1‑150 (MQ=255) gTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTGCGCCGTGc > 2:59157/1‑150 (MQ=255) tACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTGCGCCGTGCa < 2:605135/150‑1 (MQ=255) gCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTGCGCCGTGCAGTCGACTG‑ACGgcgc < 1:483639/150‑1 (MQ=255) ccGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTGCGCCGT‑CAGTCGACTGCACGgcgca < 1:437156/150‑2 (MQ=255) | GTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCATCCAGCCGGGGGGCTTGCCATCGAGCGTAGATCATCACTCGCAGGGCGTAGGGTCGGGTGCGTGTCACTTGGCTGTCCAGAACACATAGTCAGCCTGGTACTGGACGACCTGCCTGGCACCTTTGTTCTGCGCCGTGCAGTCGACTG‑ACGGCGCC > NC_002947/3400526‑3400806 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |