New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4593882 =	47 (1.590)	3 (0.140) +AGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCT	3/174	NT	9.8%	intergenic (+142/+157)	mccA/PP_4068	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator
	?	NC_002947	= 5557913	31 (1.050)					intergenic (‑233/+98)	PP_4888/purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase

TACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4593954‑4593882 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTC  <  NC_002947/5557913‑5557873                                                                          ||||||||||||||||||||||||||||||||||||                                          tagtCGCGGCCTGCGCCTAAGCAGCAACATGGGTCCGCCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTC  <  1:398190/146‑1                                        CCCGATCGGATGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCG               >  1:509482/1‑98                                        CCCGATCGGATGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCG               <  2:509482/98‑1                                                                     GCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGG              <  1:796607/70‑1                                                                     GCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGG              >  2:796607/1‑70                                                                                                     CCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAC        >  1:637185/1‑44                                                                                                     CCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAC        <  2:637185/44‑1                                                                          ||||||||||||||||||||||||||||||||||||                                          TACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4593954‑4593882 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTC  <  NC_002947/5557913‑5557873

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.